GgaINT0124004 @ galGal4
Intron Retention
Gene
ENSGALG00000001797 | GPSM1
Description
G-protein signaling modulator 1 [Source:HGNC Symbol;Acc:HGNC:17858]
Coordinates
chr17:7923764-7925552:-
Coord C1 exon
chr17:7925393-7925552
Coord A exon
chr17:7923973-7925392
Coord C2 exon
chr17:7923764-7923972
Length
1420 bp
Sequences
Splice sites
5' ss Seq
TACGTAAGC
5' ss Score
5.9
3' ss Seq
GCTCCTCTCCCCCCTCCCAGCAC
3' ss Score
8.55
Exon sequences
Seq C1 exon
AAGATCAACCGGACCCCTTCGGATGAGGAATGCTTCTTTGACCTGCTGAGCAAGTTCCAGAGCAACCGGATGGACGATCAGCGCTGCCCGCTGGAGGAGTGCCCGTCGGAGGCTGCGGAGGCAGCAGCCACACCAGTCCCAGCCCTGGAAGAACGGATAC
Seq A exon
GTAAGCGTGGAGGTGTTGATAAGTCGCTGTGACTCCGGGTCGTGCTGCTCCCACGGCATGGCCGGCTGCGTGGTGCTGCTGTGCAATGGCCCGGGTGGGCTCTGGCAGGAGGGGAAGGTACTGCTGGGCGTTCTGTGTGACCACAGTGGAAAAACTTCTGGGTTTTGTCCAGTTGTTGGATGCTGCAGTGATAGGTGTTGCGTAAGGACAGAGAAGGCAGCAGGGCGGATGGATAAACAAGAGGAAGCTCCGGGTGTGCAGACAGCAAGCTTTGCTTGTGGGAAGAACAGGGATAAATGGAGGAAACCATCTGACAAATAGATGGGATGGGGAAGGCAGGCCAGGGCTGTGTCTGCGCTTCGGGTTTGCGTCTGTTTTGATGACAGCGTGTTGAGGTGCTCTGATTAAAGCAAACAGGAGCGAAGTGCTGGGGTGTGCAGGTCCTGCTGTGTGCTCCCAGGTGAGCCATTTCTTCTGGGCTAAAAATAAGGTGGAAATGAACATCGCTTTTTCAAGATGTGTTTCTGATGTAGAAATGCATTTGGCTGTAACAGCTGTGTGACTTAAGGGTGAGTTTGAGTATGGAGCTTTATTAAGAGCGTTCAAGTAGGCATGCTTTCTGTTCATCCATCACTTGGTCTCTGAGCTTTTTGGACGCGTTGTTTGAAGTTTCTTTGTCAGTGCTGCAGTTACTGTGCATTCCTACAACTCCAGGAGCTGGGGCTGTCAGAGCAGCAGTGTCAGGATCTTGGGGGACCCTCATGTGCTTTGTGCTCCCTGAGGCGATGCCCACCAGGCTGGATTTCTTACAGCTCCCCTTGCTTGTCCCCATCCCAAGTGCAGTGCTTGTTGTGTGAATGTTTTGCTGCCCAGCAGCTGCTAGGAGCCAGGAGGCCCCATGCATTGCGTGCTGCCCTGGCTGGGGCATTGCTGGGATGGGTGGCTTAGTCAGGCCTTGGCTTTGCACATTACATGCCTGCAATTATACCCAGCCCTTGGCACCATGTGCAGTGTCCAGTAAGGAACCACAGCAGTGCACAGGAACTGTACACTCACCTGCAACTGCTGCTGCCTGCACCAGGGTGGAAACCAAGGCAGCAGCAGCATCCTGCCAAGGTCTCTGCCTTACCCTACATACTAGGCAATGCAGCAGAGGCACTAGAGAAGGGTGTGAGTGGTTGCATGCTTGGGTCTCTGCTTTGGTGGTAGGTTTTTGCTTGCTTGCGTTGTTGGCACTGGGATTGTTCCTGCTTATTGCACAGGGTGGAAGGGAATGGTGCTGGTCACAGAAGCTGGGGTCCTACCCAGCTCAGCCCTGGGAGGCTTCTCAAACAGGGGCTTAAGTCTGTTGGTGAGAACTTGAGAAGACTCTGTGGTGAGCAGAGATGTGACCCTGGTGTGCTCCTCTCCCCCCTCCCAG
Seq C2 exon
CACACTCCTCCCTGATGGCATCCCCACAGACGGAGGAGTTCTTCGATCTCATCGCCAGCTCGCAGAGCAGACGGCTGGATGACCAGCGTGCCAATGTGGGCAACCTGCCAGGCCTGCGGATAACACACAACAACCTGGGGCACCTGTGCATGGAGGGGGACGCCCAGGAGCCTGGGGATGAGTTCTTCAACATGCTGATGAAGTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001797:ENSGALT00000002770:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.574 A=NA C2=0.700
Domain overlap (PFAM):
C1:
PF0218812=GoLoco=WD(100=42.6)
A:
NA
C2:
PF0218812=GoLoco=WD(100=32.9),PF0218812=GoLoco=PU(47.8=15.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATCAACCGGACCCCTTCG
R:
TGAAGAACTCATCCCCAGGCT
Band lengths:
349-1769
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]