MmuINT0073435 @ mm9
Intron Retention
Gene
ENSMUSG00000026930 | Gpsm1
Description
G-protein signalling modulator 1 (AGS3-like, C. elegans) [Source:MGI Symbol;Acc:MGI:1915089]
Coordinates
chr2:26200122-26200879:+
Coord C1 exon
chr2:26200122-26200278
Coord A exon
chr2:26200279-26200670
Coord C2 exon
chr2:26200671-26200879
Length
392 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTCACTTTCTGCCCTTACAGCTC
3' ss Score
11.21
Exon sequences
Seq C1 exon
GGTATTCCCAGGGCCCCGTCTTCTGACGAGGAGTGTTTCTTTGACCTGCTGAGTAAGTTCCAGAGCAGTCGCATGGATGACCAGCGCTGTCCCCTGGAGGAAGGCCAGGCTGGGGCTGCTGAGGCCACAGCTGCCCCATCCGTGGAGGATAGAGCAG
Seq A exon
GTGAGTACAGTCTGGGTGAGGTCCACCAGCCAGACCCAGCACTATGTCTGGGAGCCCCCCAACAAGCAGGCTAGGCTGGCTGCAAAGGGCCTCTGTCATCCAGAGCTCCCTCCACACTTGTCCCTGAAGCTGCATCCTGGGAAGTATGTAATTACCCCACCCTGAAGAACACGAAGTGTCTATGCATCCCAGCCTTTGAGTGTGTGGGAGGCCAAAGCTTTCTCCTGTCAAAGTCCTGGGAGGCAGGGGTGGGAGGCAGGGCAGGGGCAAGATGGTTAGAGGCAAGCATCGGAGATTTATTAGGGCCATATTCTGTGGGGAAGACTGGGCCAGTCCCAGATGCCAGCACCACCAATGGCCCCCTCTCCAGCTCTCACTTTCTGCCCTTACAG
Seq C2 exon
CTCAGTCCTCCGTGACAGCTTCACCACAGACAGAGGAGTTCTTTGACCTCATTGCCAGCTCCCAGAGCCGCCGGCTGGACGACCAGAGGGCTAGCGTAGGCAGCCTGCCTGGGCTACGCATCACCCTCAACAATGTGGGGCACCTCCGAGGCGACGGGGACGCCCAGGAGCCGGGGGATGAGTTTTTCAACATGCTTATCAAATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026930-Gpsm1:NM_153410:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.673 A=NA C2=0.817
Domain overlap (PFAM):
C1:
PF0218812=GoLoco=WD(100=43.4)
A:
NA
C2:
PF0218812=GoLoco=WD(100=32.9),PF0218812=GoLoco=PU(47.8=15.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTCCCAGGGCCCCGTCTT
R:
TTGAAAAACTCATCCCCCGGC
Band lengths:
345-737
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: