HsaINT1014793 @ hg38
Intron Retention
Gene
ENSG00000160360 | GPSM1
Description
G-protein signaling modulator 1 [Source:HGNC Symbol;Acc:HGNC:17858]
Coordinates
chr9:136355690-136356550:+
Coord C1 exon
chr9:136355690-136355846
Coord A exon
chr9:136355847-136356341
Coord C2 exon
chr9:136356342-136356550
Length
495 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
CACCCTCTGGCCCCCCGCAGCCC
3' ss Score
9.22
Exon sequences
Seq C1 exon
AGCATCCCGAGGGCCCCGTCTTCGGACGAGGAGTGCTTCTTTGACCTGTTGACCAAGTTCCAGAGCAGCCGCATGGACGACCAGCGTTGTCCCCTGGACGATGGCCAGGCCGGGGCTGCCGAGGCCACGGCCGCCCCCACCCTGGAGGACAGGATCG
Seq A exon
GTGAGTGCCCCCCTCAGCCGGGCCCTCCCTTGGGCTTGTCTGCAGGGGCCAGGACCAGGGCTCCCGTCCTGCTTCCAGTGAGGAGTTTTCGGGGGCAGACCAGCAGGCCAGCTGCAGAGCACCCTGTCACTGAGGGCGCCCTCCGCAGCCCCCACAGAGCAGCATCCCGGGAAGCGTGTCATCAGCCCGCCCTCCGGGACACACTCAGGCTGCAGGGGCAGTCTCAGGGAGGGGGCAGGGCGTGGGGGACTGGCGTTCTCCTCCTGTCTCCTCCTGTCACCCCCTGGAAGCCCCTGAGGTGGGCGTGGGAGCCACAGCAGGGGGAGCAGCTGAGAGCTGCCTAGGCCGGTCAGCGGAGACTCCCCCAGGAGCCATGGCCCCAGCAGCACAGTGGGCTGGGCTGGGCTCAGAGGTCAGAGCTCACTGTGGCCGCAGCCCGAGCCTCGGGCTTGACCCCGCACTGGGTCCCAGGTCTCACCCTCTGGCCCCCCGCAG
Seq C2 exon
CCCAGCCCTCGATGACGGCCTCGCCCCAGACCGAGGAATTCTTCGACCTCATCGCCAGCTCCCAGAGCCGCCGGCTGGACGACCAGCGGGCCAGCGTGGGCAGCCTGCCGGGGCTGCGAATCACCCACAGCAATGCAGGGCACCTCCGAGGCCACGGCGAGCCCCAGGAGCCGGGGGACGACTTCTTCAACATGCTCATCAAGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160360:ENST00000440944:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.815 A=NA C2=0.948
Domain overlap (PFAM):
C1:
PF0218812=GoLoco=WD(100=43.4)
A:
NA
C2:
PF0218812=GoLoco=WD(100=32.9),PF0218812=GoLoco=PU(47.8=15.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACGAGGAGTGCTTCTTTG
R:
CTGGTACTTGATGAGCATGTTGA
Band lengths:
344-839
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains