RnoINT0067118 @ rn6
Intron Retention
Gene
ENSRNOG00000018666 | Gpsm1
Description
G-protein signaling modulator 1 [Source:RGD Symbol;Acc:628682]
Coordinates
chr3:3790714-3791486:+
Coord C1 exon
chr3:3790714-3790870
Coord A exon
chr3:3790871-3791277
Coord C2 exon
chr3:3791278-3791486
Length
407 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TCATTCTCTGCCCCTCGCAGCTC
3' ss Score
9.1
Exon sequences
Seq C1 exon
GGTATCCCCAGGGCCCCGTCCTCTGACGAGGAGTGTTTCTTCGATCTGCTGAGTAAGTTCCAGAGCAGTCGTATGGATGACCAACGCTGTCCCCTGGAGGAAGGCCAGGCTGGGGCTGCTGAGGCTACAGCTGCCCCAACCCTGGAGGAGAGAGCGG
Seq A exon
GTGAGTACAGAGCCTGGGTCGGGTCCACCAGGCACACCTAGCCCTGAGCCTGGGAGCCTTCCAACAAGCAGGATAGGCTGGCTGCAAAGGGCCCCTGTCATCCAGTGCTCCTTCCTCACTTGTCCTTGAGGCTGCGTCCTGGGAAGTATGTAATTACCCCACCCTGAAGAACACGCAGTGTCGTCTATGCATCCTAGCCTTTGAGCGTGTGGGAGGCCAGAGCTTTCTCCTGTCAGCTCCTGAAGTCCTGGGAGGCAGGGGTGGGAGGCAGGGCAGGGGCAAGATGGTTAGGAGCAAGCATAGGAGATTTCTTAGGGCCATATTCCCTTTGGGGAAGGGTGGGGCAGCCCCGGATGGCAGCACCACTAGCAGCCCCCTCTCCAGCTCTCATTCTCTGCCCCTCGCAG
Seq C2 exon
CTCAGCCCTCTGTAACAGCTTCACCACAGACTGAAGAGTTCTTTGACCTCATTGCCAGCTCCCAGAGCCGCCGGCTGGATGACCAGAGGGCTAGCGTAGGCAGCCTGCCTGGGCTTCGCATCACCCTCAACAACGTGGGGCACCTCCGAGGCGACGGGGACCCCCAGGAGCCAGGGGATGAGTTTTTCAACATGCTTATCAAATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018666:ENSRNOT00000067840:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.807 A=NA C2=0.881
Domain overlap (PFAM):
C1:
PF0218812=GoLoco=WD(100=43.4)
A:
NA
C2:
PF0218812=GoLoco=WD(100=32.9),PF0218812=GoLoco=PU(47.8=15.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCCCCAGGGCCCCGTC
R:
AAAAACTCATCCCCTGGCTCC
Band lengths:
342-749
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]