GgaINT0124218 @ galGal4
Intron Retention
Gene
ENSGALG00000008750 | DPH7
Description
diphthamide biosynthesis 7 [Source:HGNC Symbol;Acc:HGNC:25199]
Coordinates
chr17:1575085-1576678:+
Coord C1 exon
chr17:1575085-1575179
Coord A exon
chr17:1575180-1576505
Coord C2 exon
chr17:1576506-1576678
Length
1326 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
AATGTTTTCTCTGTGTTCTGCTC
3' ss Score
0.56
Exon sequences
Seq C1 exon
AAGAACAGCTGCATGTTGGAGCCTTGCTTCAGGGTCGATCTCGGTGCGCAACGCCTGGCCTTGTCCTTAGACTGGTCCACAGGACGTGAGCAGTG
Seq A exon
GTGAGGATGGGAGATAAAGGCTGCTGCTGAGGTCGCTGCGTGTGTGACACTTTGCAGGCTGAGGCTTTTGATGAATGAAACAGGTGGCTTTGTTTGCGAAGTAGCTTAAGATTTCCTCCATCCCAGATGCCTCCCTTGGCCTTCTCTGAAAGTTACTGTTTCCAGAGTGAGGGTAACAAAGGAACAAGTGCTGTGGTCACTGTAGCAAGAGCAGAGCCTGATCCAACCACAAACATGAGGCTGTGCCATAGCGAATGATGGCAGGTGAACCAGGGACATTTATCTTTGCTTAGAGGAAAGACTGCAATGGGATGCAGCTAGACCCATTGGATCCAACTCAGTTTTTCCATCTGCTCACAAAACAGCTGAAATTCTGGTGTGAAAGTCTGCTTAAGAACTGATAGTAAGAAAATTTTAAGCAGTTTCATGAGAATCAGTAGAGAGTTGGTTTGGAAGTGGCTCATACGTTTGATTTCAGGAATGGCATAATTGAATTACAGAACATGAATTAGCTGTCCCAGGGAAAAGGTCAGGTGTATGTTTTCTGTAAGTTAAGTGTAAAACAGAGTGATACCTTCAATGTGAGACTGGAAACTGAACGGGCTCACAAGCAGTACTGCACTTTGTGTTGCAGGGCAGGTAATCAGTTGTTTTTCCTAATTTAAAGCTATTTCTGTGCATATGTTTTCTGTTGTTTAATGAATAAGCAGAGCTTCTAGTTCTACTTTATTCTCTATGGTTGCCATGATGAAAGGTTGCTTTGAAGTGCTTTACTGTTTTCTGTTCAGAGACAAATAACCCCTTCTAGAAGCTGAATGTGCAGCCTTTGCATCTTGGTAGAACTACCAGTGCAGGGCTGGGGGTGACCAGGTATCTCTTGCATGGAAATGTGGGAGATTTGGTATGGTTTAGTAACTGGCATATGATGTAGAACTGGAAAGAAGCTCTGAGACACCAAAATCGGTACCTACAGCTGCAGCTAACCTGTTAAGTAGTTCATGTCAGGGAATTAATATCAAGCCCATGAGAAGTCAAGTTAAGTATTGAGGGGAAAGAAAGACCACGGCTGTTTTTGTTTCAGTCATATAAATGTGAGCAGATGGCTCCCTCTGTGAGATCAGGGAATAGGCATCACTAGTATGGATGGTTTTAAGATGGGAAGCTGAAAATAATTGTATAAATGCATCCACTGTGGTGTCTGTTTCTCTTGATGTTCACTTGAATCAAATATATATGTTAGCCATCTATAGTTTGGCAGCTAGTTTGTGCTCTGTGATTACTGAGGACATCAGTTTCAGAAATTTCTAATGTTTTCTCTGTGTTCTG
Seq C2 exon
CTCTAGTGGATGTCCTTTGAGAGTGATCAGCAGTGATTCAGAGGGGAAGCTGAATCTGTTCTCCATAGATGAATCTGCGCCTTCTGTGCACGTCCTGAACCAGTGGGAGGCTCACAAGTTTGAGGCCTGGATTGCTGCTTTTAATTACTGGAACATTGATATAGTGTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008750:ENSGALT00000014239:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAACAGCTGCATGTTGGAG
R:
TCAATGTTCCAGTAATTAAAAGCAGC
Band lengths:
254-1580
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]