MmuINT0175810 @ mm10
Intron Retention
Gene
ENSMUSG00000026975 | Dph7
Description
diphthamine biosynethesis 7 [Source:MGI Symbol;Acc:MGI:1914478]
Coordinates
chr2:24965560-24966674:+
Coord C1 exon
chr2:24965560-24965654
Coord A exon
chr2:24965655-24966501
Coord C2 exon
chr2:24966502-24966674
Length
847 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TATTGGCTCCTTGTTTGCAGGGC
3' ss Score
7.86
Exon sequences
Seq C1 exon
AACAACAGTTACACCCTGCAGCCAATATCCAGCCTCGCCCTGGATGAGAATTGTCTGTCCTTGTCAATGGATTGGTCCACTGGGAAATCTGTCAG
Seq A exon
GTAAGGGCTAGGTTTGGTTGGGTTCTGAGTCTCCTGAAGAATACTCCCTGTATCTATTCTAGAAAGGATTAAAGCTGCCTTCTGCTAGCTTGGTTCCCCAAATCTGTATATCATTGTCAGTCCTAACCTTAAAAATTGAAACTTGGGGCTGGAAAGATGGCTCAGTGGGTAAGAGCCCCTGACTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCTTAACGAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAGTCTTTTTTAAAAAAAGTTGAAACTTGTAGCATTTTGGACTGTTAGTGATGGTGAGAAGATGGGATGTTTAGGAGAAGCCAACCATGGTTTCAGTGATGAACTATGTGATAGTTTCATCCTTGGTGAGGTACCCAACAGGCCGTCTTGAGCCTGGTTACATGGCAGGGTCTCCTGGGACATCTGAGAAGCTGGAAGACGATGGTTGTGATGGTTCTTCCTGTAATGCCAGTATTTGGGAAGCTGAGGCAGGTGGATTTCAAGTCTAAGACCACCTGTCTCGCTGGGCAGTGGTGGCGCACGCCTTTAATCCTAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTTTTGGAAAAAAAAAAAAAAAAAAAAAAGACCCACCTGTCTCAAAAACAATTGAACAAAAAACCAGAAAAGGATGCTAACTAGACTTTAACAGCCTCTCTATTGGCTCCTTGTTTGCAG
Seq C2 exon
GGCCAGAGAACAGCCCTTGAAGATCATTAGCAGTGATTCTAAGGGGCAGTTGCACCTCCTGATGGTGAATGAGGGCACAGCTGAACTACAGCTAGTAGCATCTTGGCCAGCCCATCACTTTGAGGCCTGGATTGCTGCTTTCAATTACTGGCAGACAGAACTCGTGTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026975:ENSMUST00000028351:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACAGTTACACCCTGCAGC
R:
TACACGAGTTCTGTCTGCCAG
Band lengths:
262-1109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types