MmuINT0175810 @ mm9
Intron Retention
Gene
ENSMUSG00000026975 | Wdr85
Description
WD repeat domain 85 [Source:MGI Symbol;Acc:MGI:1914478]
Coordinates
chr2:24821080-24822194:+
Coord C1 exon
chr2:24821080-24821174
Coord A exon
chr2:24821175-24822021
Coord C2 exon
chr2:24822022-24822194
Length
847 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TATTGGCTCCTTGTTTGCAGGGC
3' ss Score
7.86
Exon sequences
Seq C1 exon
AACAACAGTTACACCCTGCAGCCAATATCCAGCCTCGCCCTGGATGAGAATTGTCTGTCCTTGTCAATGGATTGGTCCACTGGGAAATCTGTCAG
Seq A exon
GTAAGGGCTAGGTTTGGTTGGGTTCTGAGTCTCCTGAAGAATACTCCCTGTATCTATTCTAGAAAGGATTAAAGCTGCCTTCTGCTAGCTTGGTTCCCCAAATCTGTATATCATTGTCAGTCCTAACCTTAAAAATTGAAACTTGGGGCTGGAAAGATGGCTCAGTGGGTAAGAGCCCCTGACTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCTTAACGAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAGTCTTTTTTAAAAAAAGTTGAAACTTGTAGCATTTTGGACTGTTAGTGATGGTGAGAAGATGGGATGTTTAGGAGAAGCCAACCATGGTTTCAGTGATGAACTATGTGATAGTTTCATCCTTGGTGAGGTACCCAACAGGCCGTCTTGAGCCTGGTTACATGGCAGGGTCTCCTGGGACATCTGAGAAGCTGGAAGACGATGGTTGTGATGGTTCTTCCTGTAATGCCAGTATTTGGGAAGCTGAGGCAGGTGGATTTCAAGTCTAAGACCACCTGTCTCGCTGGGCAGTGGTGGCGCACGCCTTTAATCCTAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTTTTGGAAAAAAAAAAAAAAAAAAAAAAGACCCACCTGTCTCAAAAACAATTGAACAAAAAACCAGAAAAGGATGCTAACTAGACTTTAACAGCCTCTCTATTGGCTCCTTGTTTGCAG
Seq C2 exon
GGCCAGAGAACAGCCCTTGAAGATCATTAGCAGTGATTCTAAGGGGCAGTTGCACCTCCTGATGGTGAATGAGGGCACAGCTGAACTACAGCTAGTAGCATCTTGGCCAGCCCATCACTTTGAGGCCTGGATTGCTGCTTTCAATTACTGGCAGACAGAACTCGTGTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026975-Wdr85:NM_026044:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACAGTTACACCCTGCAGC
R:
TACACGAGTTCTGTCTGCCAG
Band lengths:
262-1109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: