DreINT0059668 @ danRer10
Intron Retention
Gene
ENSDARG00000062083 | dph7
Description
diphthamide biosynthesis 7 [Source:ZFIN;Acc:ZDB-GENE-070410-57]
Coordinates
chr5:24577163-24577490:-
Coord C1 exon
chr5:24577396-24577490
Coord A exon
chr5:24577321-24577395
Coord C2 exon
chr5:24577163-24577320
Length
75 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
TCAGTGTTGTGGTTTTCCAGCAG
3' ss Score
6.57
Exon sequences
Seq C1 exon
CAGGGCTCCAGTGGTCTGGAGTGTGAGCTGAGCACAGATTTGGGTCCTGACAGACTGGCCTTGTCTTTAGACTGGTCCACAGGGCGAGGCGAGAG
Seq A exon
GTATGATGAGTCTGTCACTGATCATTTTTCTTTGCACTGACTCTGTATGTGATGTTCAGTGTTGTGGTTTTCCAG
Seq C2 exon
CAGTGATGTGCGTGTGGTGTCCAGTGACTCCACTGGCTCTCTCACACTGCTGTCTCTGGGGGAAGCAGATTTAACCGCTGTGTGTCAGTGGAAAGCTCACGAATATGAAGCCTGGATCTCAGCGTTTAGTTACTGGGATACTCAGACTGTGTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062083:ENSDART00000089339:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGAGCACAGATTTGGGTC
R:
CGTGAGCTTTCCACTGACACA
Band lengths:
171-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]