BtaINT0052328 @ bosTau6
Intron Retention
Gene
ENSBTAG00000038691 | DPH7
Description
diphthamide biosynthesis 7 [Source:HGNC Symbol;Acc:HGNC:25199]
Coordinates
chr11:105577201-105577839:+
Coord C1 exon
chr11:105577201-105577295
Coord A exon
chr11:105577296-105577666
Coord C2 exon
chr11:105577667-105577839
Length
371 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CATTGGTTCCCTGTGTCCAGGGC
3' ss Score
7.19
Exon sequences
Seq C1 exon
CAGGACACTTGGACACTACAGCCCTGCTCCCGCTTGGCCCTGGAAAAGCAGTGTCTGGCCTTGTCCTTGGACTGGTCCACTGGGAAAGCTGGAAG
Seq A exon
GTGAGGGCCAGTGGTGGTGGGCCAGAGTCTTGGCTATTTCGTGTGAGAGACAGAAGGAAAGCCACCTTGCTGGCTGTGACTGTGGCTCTCACGCCTGGGAGTGTCACTGCCAGTCCTTATCTTGAAAGAAAAAGGGAGCATGTTTTCACCAGGGGAAGCTGACCCTAGTTTATTTTGACAAGCTCATGGCAGCTTTGGTTTCTGCCCAGGCAAGCCTCTTAGGAAGCTTGTTCACATACCAGGGCCTGGAGAGCCTCTCTCTGCTGTGTCTTGGAGGCATAAAGTGTCCCTGCTTGGGAACCACAAGAGGTGAGGAGTTTAGGGCAGTGAATCGATTTCAGCCAGATTCTCCATTGGTTCCCTGTGTCCAG
Seq C2 exon
GGCCAGTGACCAGCCCTTGAAAATCATTAGCAGCGACTCCAAAGGGCAGCTCCACCTCCTGAAGATCCTCGAGGCGGGGCCCGGATTGCAGGCCGTGGTCACCTGGCGGGCCCATCAGTTCGAGGCCTGGGTTGCTGCTTTCAATTACTGGCAGACGGAAGTCGTGTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038691:ENSBTAT00000063228:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.008
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTTGGACACTACAGCCCT
R:
CGACTTCCGTCTGCCAGTAAT
Band lengths:
255-626
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development