RnoINT0050767 @ rn6
Intron Retention
Gene
ENSRNOG00000008102 | Dph7
Description
diphthamide biosynthesis 7 [Source:RGD Symbol;Acc:1304868]
Coordinates
chr3:2173314-2174055:+
Coord C1 exon
chr3:2173314-2173408
Coord A exon
chr3:2173409-2173882
Coord C2 exon
chr3:2173883-2174055
Length
474 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TATTGGCTCCGTGTTTCCAGGGC
3' ss Score
7.7
Exon sequences
Seq C1 exon
AAGAACAGCTATACCCTGCAGCTTATATCCAGCCTTGCCCTGGATGAGAGCTGTCTATCCTTATCACTGGATTGGTCCACTGGGAAATCTGTAAG
Seq A exon
GTAAGGACTAGACTTGGTTGGGGTCTGAGTCTCCTGAGGAACATTTCTTGTTTCTGTTCTAGAGAGGATTAAAGCTGCCTTCTGCTACCTTGGTTCCCCAAATCTGTATGTCACTCTCAGTCCTCACCTTAAAAACTAAAAATTTTGGGAAAATTAGTGATGAGAAGATGAGAGAGAGGTTCAAGAGAAGCAACCATGGTTTCAGTAACAAACTATGTGACAGTTTCATCGTTGGCCAGACACCCACGAAGCTGTCTTGGAAGCTTGGTTACCCAGAAGTATCTTCTGGGACATATATTTTAGAGCTAGAAGAGAATGGGCGTGATGGTTCTTCCCTTTAATGCCAGTTCGGGAAGCTGAGGCAGGTGGATTTCAAGTTTAAGGCTGACTTGTCTCAAAAACAAAGGAAAAAAACCCAGAAAAGGATGCTAAGTAGATTAAGTACCAGCCTCTCTATTGGCTCCGTGTTTCCAG
Seq C2 exon
GGCCAGAGAGCAGCCGTTGAAGATCATTAGCAGTGACTCTAAGGGGCAGCTGCACCTCCTGCTGCTGAGTGAGGGCGCAGCTCAACTACAGCTGCTGGCTTCTTGGCCAGCCCATCACTTTGAGGCCTGGATCGCTGCTTTCAATTACTGGCAGACCGAACTTGTATATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008102:ENSRNOT00000046898:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAACAGCTATACCCTGCAGC
R:
ATACAAGTTCGGTCTGCCAGT
Band lengths:
262-736
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]