GgaINT0124587 @ galGal3
Intron Retention
Gene
ENSGALG00000001187 | STRBP_CHICK
Description
NA
Coordinates
chr17:9612508-9615648:-
Coord C1 exon
chr17:9615604-9615648
Coord A exon
chr17:9612952-9615603
Coord C2 exon
chr17:9612508-9612951
Length
2652 bp
Sequences
Splice sites
5' ss Seq
ACGGTACGT
5' ss Score
11.34
3' ss Seq
TCCCTTTTTTCTCTCTGTAGGTT
3' ss Score
13.39
Exon sequences
Seq C1 exon
GCTATGGAGCACCGTATGGATATAGTACAGCTGCACCAGCTTACG
Seq A exon
GTACGTATAGCCCACTAATTAACAAATTAGAAAATATACAGAAATTCTTGTGCCAGTCCAAATGTGACAGTCTAAGCTGTCTTAGGATTTACAGTAGAAATTTAAGAGATTAAAGTTCTTAAACCATGATTACAAGCACACTTCTATGCCATAACCTTGTGGTTCTTTTTTGGTTGGAGTAGCTTTTTTGCCTATGCTTTGCCTGATCTTGTGGAAGGACTGCTTGTTCTAATTGCCTGTTCCCTTTCATACTGAAACTGAAGTAGTTTTCTTACTTTTTACAGCCAATCTGTGCTCCATTCAAAGACTACCGAAGGGCCTATGTCAGCATCTCTGAGCAATATTTATCTAAGAGACATTACAAATCATTGGCAAAATATTTGTCCACAAGTTTAACTGGCTTGTGGACTGAGCTCCCTTAATACAGTCAACTCCGTGAAATATCCAGTACAGTCTATGTGCATACACAAGCCAATCCCCAACATACACACACCCTTGCTGCAGGCTAAAACCACTGCTACTTGGGACAAGCAGAATGATTTTCTGTAGCTTATACTGTGATTAGGCTGCAAGGATGGTAGTATATGGTCATTTGCCACAATACTTTCTACTAAGAAACACAGTAAAATCAGGCTGGTAAAGGATTGGTTTCATGAAGACAGTAAACTAAACTAAAATTTAGCAATGATGGGAAAGGTTTTTCTTACTTCAACTTCTCCCTACCCACCTGCTTTCTTTTTTAATGCTAGACTAACATAGCATATTTACCTCTAACTGGCCCTTTTGGTTACTTTGAATGAGGTTTATGTGGCAATGGGAGCAAAGGAATTTGGAGTCAGTGATATGTCCTGGCAAGCAAAAAAAAAACACCCTGCATCTACTAGAACTGGTACCAATGTCCTCACTTGTCACAGGACAGGGGGGAAATCCTGCTACTCAAATGACAAGCTGGGTACATTTCAAGGTCTGCAGTTTTTTTTCACATGGGAAACCAAGCTTGCATTCCTATTTCCTAGCTTTTGTCATATGTACAATACTTGTTCTTTTCCAACTTATATAGCTTGGAAAATACCAACTCCCCAGATAGCATTATGAAAGTTAGAAACAGTTTCAAGTATTTATTTCATCAATTTCTTTTCGAGGTTTGAGCTATAGGCACTGGAAGAACGGCGCTGCTTTATTGAAAACGTGCACTTTGCTTGACTAAGACTAGCTGGTCCTATTCTGTACTTCTACAGTGGAAAGGGGAAGTACAGTGGACAATGGGCTGCACTTAAAAGTGTGCAATTCTCCCTTGTAAATTCAAGTAAACCTCTCTAGCTCTGCAAATTCTGTCACACTGACTGGCCGAGTGCTTTGAAAAATGGCAGCTGACAGCTGTGCTTTCCTATTGAGTGTATTCTGTACAGTCCTTTTATTTCCATATTTTTTCAAGGGAAAAAAAAAGGAAATTAAGTTTATAGCTTATTTCATGGCATGCATTAAAAAAAAAAAAATCCCTTTACTTCTTTCCAACCTGTAGTGACTGACTATAACCTACATCAGTAGATACCTGCCCATATGTATTTTTACAAGCCAGAGCATACAGTGACATAACACAAATCCTTTCCCAGCTGAAGACAGAACAACTGTTACCAGTGTTCCTGCAGTATGAGTTTTACTTGCAGCTTTTTATATTCCTTTCTTCTTTCCTTCCGTTTCATGTTTTTCTCGTGATGCTTATTTTGGGAGATGGATTTTAATCATTTTGGGAGCTGAATTTTAATCATTTCTTTGTGTATATGTGACATACCACTGACTTCAAAACATTGTGGAATTGGATGCCCCCATTTTTCACATAAAGAGTTTCTGTTTTTAATGTCTTATGATTGTGATGCGAAGTACTGGGATAATGCTTTTTGGCTGTAAGGTAAACATGTCTCTCTGCCTTTGTAAGCTGTTGCATGTTGGGAAACTTCACTTTGATCATTTGATGCTCTGGAATACCTGCTGTTGCTGCTTTGTGATTTCTAAATGGATACGTAGGTTAAAAACTAGTATATAAATAGGAAAGAATATTTTAAAAAAGCATTTAATTGTGCAGAAGCTTGTGAGGCCACAAGAACTCTATAATAATCATGGAATCAGGCATATATTAATCTTTCCAGACTTGCAACTTTAGTACAGGATAGCAAATGCAAAATAAAGAAGGAGATACAGAATTTACTGTAGGTGCGTGATTTCTGACTGATCTACATGGATGCTTATCAGAACTGCTCAACAGCTTCCCTGTGAATTTTCTTTTATGCATAGCAGTTCCTGTCTAGAATATCTGCAGTTGTAACTGGCCTATGAAGTTAGAAAACAGAATGAGGTAGGAGAGATGAAGCTATTTCAAAATGATAGTTAAAATCCAATCTCTTTTCAACAAAATACATTCTCTTTTGAGAATACTGCTTAATTTTACCAAATACAAGGACAACAACAAACTAAATGCTAACCATCTGTTTGAAATAGCTCAAGTGTTGAAATGTTACTGTGTTTTAGACTTGCACCCTAAAATGACATCAACTGATCTGGAAAAGGTTAATGAAAACGTGATTATAAGCTCTTATCTGACTTTCTTGGATCACTGAACTTATTTGGAGTCCTCTCCCTTTTTTCTCTCTGTAG
Seq C2 exon
GTTTACCCAAGAGAATGGTTCTGTTACCAGTTATGAAATTCCCAACTTATCCTGTTCCCCACTACTCATTCTTTTAGCAAATGGCAGAAGCTAATTCCTATTGATTGAACAACACAGTACAGTACAGAATGTTAGAAGAAAAAGCCTTTTTATCCTGTTTTCTTTGAACACATACTTGAGCAAAGTCATTTGTAAAGAAACATCTTTTTCCTACTTTTTGATTTTAACAAAATGCAAATTTAGTTCTCTAAAACTTGAAAAAAAATGTTCTGTGAAATGTTACCTCATTTTCAAATAACTTATACCAGCCTTCTGTTATAGGGAAGAACTAGAAGCTTAAACCTTACGTTTTAAATGAAGTATCCGATTATGTAAAATTAAATTTGTGAAGGATGTATAGAATATAAAACACTGATCACAAATAAACTGTTTTGTTGTAACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001187:ENSGALT00000034915:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]