HsaINT0161116 @ hg38
Intron Retention
Gene
ENSG00000165209 | STRBP
Description
spermatid perinuclear RNA binding protein [Source:HGNC Symbol;Acc:HGNC:16462]
Coordinates
chr9:123124709-123128258:-
Coord C1 exon
chr9:123128214-123128258
Coord A exon
chr9:123125674-123128213
Coord C2 exon
chr9:123124709-123125673
Length
2540 bp
Sequences
Splice sites
5' ss Seq
ATGGTACGT
5' ss Score
9.89
3' ss Seq
TCCGTTTCTTTTCTCTGTAGGTT
3' ss Score
12.37
Exon sequences
Seq C1 exon
GCTATGGAACACCATATGGTTACAGCACAGCTGCCCCTGCCTATG
Seq A exon
GTACGTACACCATCTTACTGATATCTCCTCTTAGCGACTGTCACAGCAATCCAAAGCACAGTTTCTATCTAGGGTTTTTGTAAATTAATTGGAGGATCTCAGATTTATTCATTCTAGTGACCCAACTTAAATTCCTTTTGAAAATGCCACAACCTTGTGGTTCTTGGTTTGGTTGGAGTTGCTCTTCTCTCCGCTTTGCCTGATTGAAGGACTGCTTGTTCTAATTGCCTGTTTCTGACCATATTGAAATTAAATATTTTAAGTAGTTCTTCTTACAGCCAACTGATACTCCATTCAAAGGCTACTGAAGGGCCATACTCAGTTGCTAGCTTGGCTGCCTACCAGTTTTAAAGCCACACTTAAGTTTCTGGTTTGGAACCGTGTGAGTTGTGGGTAACTTAAGTCAAGAATAGGAACTGCTCACTTCAAATTTGTAGCCTTCATTCTTTTCCATAACTTTGCTTTGGGGTTGAAGTAAATGGGTATCATTGGCCCTAGAGAGGAAGTGATAGTGGGTTTCACCAGCAGTCTTACTTAAGTGCTCGCTGCAGGAAGTCTGTAGTACATGCTAGAATATCATAGGTGTTTCTCTTCTCCCCTCTAAAATAAAAAATAAAAGCAAATGCATAAATGAACTCCAGTGGCCCTTTGGATAACTTTTGAATGAGGTTTATGTGGCAATGGAGGCAATAGGTTTGGAGTCAGTGATATGCTCTTAGACACTTTTTTCTACTCAGGTGCTACATGTTATAGAATCAGCCATCTGCAGGGTGTTGTCAGAGAAGAGAGCATGAGAGTGTGTGTGTGCAAGAGTGTGTGTGTCAGCATGCCCCAGGCTGGGTGTGCATCCACACAGAAGGGAAAGGCCCTTCCTGTATTGCCAGTTTTGGCATTAGTCCTCTACATGAGCCTCAGACCTTCGCATTGTGCATTTTCTCTTCATGCATCTGCTTTGCCATTTTTGTTTGGATGAAAATTGTGTTCCTAAAACACTGCTGAACTGAACCTTCATCTGATTTCGTAACTGTGGACATAAGTAGAAAGTGAATAGTTTGACCACTTTGCCCATTAAAATAGTTTATATCCTAGAAAGATGTGAAGCTACAAGGGTCACACTTTCGGAGCAAATTTTCTTTTAGGCAAAGTGCAGAGCCTGGAGCTACATCCTTTATATCCTCTGGCACACTCGGGTGTGGTCAAGGCTTCCCCATATTTTGAACTGAGCCGTATGGGTAACTAGGAATTGGAGACTAATGCAATAATAAGCTTACGCAGGTTTCCTTCTAAATTCAAACTCTCTAGTTCCTTTGGGTTTGGGTTTGGCCATTTGCTTTTAACTATTCAGCTGGCTTCTGGGTCTCCTGACCATCTCATCCTCTCTGTGACTTAGGTCTGGTCCATTTATCCAAGTACATTTTGGCTCACTAGACTCACTGTACTATGTCTTGTATAAGTGCCAAAACATCTGCCGCTTGGGGCAGATATTTAAATCTGTGTCTTTCTTTTAGACATACAGTAAGTTTCAGATTCTTCAGTAAAGGTTTGCTAGAGCTCGATTTTTCCTTTGAAAATACTTTAATATCTAGATTCTAAGTTACATTCATGTTTTTCCTTGGTCTTTTTTTCTCTCTTGTTCCTCCCTTTCCTCCTTTAACATTATACTTTCACCCTGTGCCCTCTGAGCCCCCACATCAGAAAGCTCCTCTCTTCCACGTGCCATATAACTGACTTCCAAAGCTGGTGAAATTTGATGCCCCCATTTTTCACATAAAAGATTTGGTTTTTAAATGTTACTGTGATGCAAACCTACTAAAACGATGCTTTATTTTGGCTGTAAGGTAAATATGTCTTTTGGCCTTTGTAAAGCTGTTGCATGTGGGGTAATTTCCCTCTGATCATCTGGTGCTCTTGAATACCTGCTGTTGCTGCTTTGTGATTTCTCCATAGGTTAAATATTAGCATAGGAAGAGGAGCAGATTTCAAATCATGCTCGACTATGCAGAAGTCTGTGAGGCCACAAGAACGTATTAATTACAAATTCAGAAAGTAATTAATCTTTCCAGATTTGCCATGCCAATATTGGCCATAGCCATTAAGAAGTTAAGTAAACGCCTGGCCATGGCTCCAGCTGGAGCTGAGGTCTGCATGGAAAGCTATGCTTTGAACCTTGACAACCCGTTTCTCCTGGAATATGTGATATGCCACATTGAGAACCAATATGGATTTCTACAGTCGATTAGAACATGATTCAATAGCATTGCTTTTGATTTTCAGAATTCATGGTAGCTCACTCAATGAAATTGCTTCCTAGATGTAGCCATCCTGATTTTGAGAGTGGAAAATATTATTTATCAAAATATTAAGAGCAATTTCAAAATAGATCTGTGAGCGATTTATGGGCCTCTTGCAAAATGGTATACATGTTGACTGACTGATCTGGAAAAGGTTAATGATAATTACTGTCAGATATTTTTTTACCTGAAATTTTTATTGGAGTATTAAAACTTATTTGGAGTCCTCTCCGTTTCTTTTCTCTGTAG
Seq C2 exon
GTTTACCCAAGAGAATGGTTCTGTTACCCGTTATGAAATTTCCAACATATCCTGTTCCCCACTACTCATTCTTTTAGCAAATGACAGAAGCTAATTCCTATTGAACAACAATACAGTACAACACAGAATGTTAGAGAAAAAGCCTTTTTATCCTGCTTTCTTTGAACACATACTTGATCAAAATTATTTGTAAAGAACATCTTTCCTACTTTTTGATTTTAACAAATGCAAATTTAGTTCTCTAAAACTTGAAAAAAAAAAAAGAAACCAGTTCTGTGAAAACGGTACCTCATTTCTGGAAAATAACTTATACCAGCCCTTCTGTTCTAGGGAAATAAAAGTCTAGCAGTTCAAAGTTTAAGTTTTAAGAGACGTATCAGATTATGTAAAATTAAATTTGTGAAGGATGTATAGAGTCTCAAACACTGATCACAAATAAACTGCTTTGTTGTAACACAGAGTACTGCCTGGTTCCTGATGCAGTCACTGATTCTTAGTTGATTGATATGTATTTGCCCCAGGGCACTTTAATTTGGGCTGTAGTTATTTTTTTTAATACAATAGAGACTTTTCATTTAACTTTAACTTTGTAAATATTGAAGTGTGTAATAAAGCCAATAAAATATGGGTTTGAATATTGTTTTAGCTTATTATTTTTGATATGTTTTGGTATCAAATTACAAGGAATTGAAAACTAATAACTTAGCCCTAGAAGCCCATTCACTTGTAAGCAAAGTGCTAAAACAAAGCAAAGGTGATTGTTAGTTTGAGCCAGTCTACTCACTTTGTAAGCCCTTTGTACTCCTGTTGTACAAGGGCCATCCCCATGATAAAGGTTCCATTCTGTTATTTGAGCATTGCTTATTAAAATGATGGCACTACCCAGAGATGGGGAAGGAGAATGTGATTATCCTAGTTTATGAATTTCCAAGTTTTTAAAAATAATAAATTAATCAATCAATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165209:ENST00000348403:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains