RnoINT0145345 @ rn6
Intron Retention
Gene
ENSRNOG00000010150 | Strbp
Description
spermatid perinuclear RNA binding protein [Source:RGD Symbol;Acc:620673]
Coordinates
chr3:21830822-21834259:-
Coord C1 exon
chr3:21834215-21834259
Coord A exon
chr3:21831777-21834214
Coord C2 exon
chr3:21830822-21831776
Length
2438 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
TCCGTTTCTTTTCTCTGTAGGTT
3' ss Score
12.37
Exon sequences
Seq C1 exon
GTTATGGAACTCCATATGGTTACAGCACAGCTGCCCCTGCATATG
Seq A exon
GTATGTACACTTTCTTACTGATTCCTCCTCTTAGGAAATTTGTCACAGCAACTCAAAGCATAGTTTGTAACCAGGATTTCAGTAAACAAGTTGGAGGATCTCACAGTTCATTCAAGTGTCCCAACTTAAATTCCTTCTGAAAATGCCACAACCTTGTGGTTCTTGGTTTGGTCTAAGTTGCTCTTCTCTCTGCTTTGCCTGACTGGAGAACTGCTTGTTCTTATTGCCTGTTTCTGACCATATTGAAATTAAATATTCCAAGTAATTCTTCTTACAGCCAGCCTATACTCCATTCAAACGCTACTGAAGGGCCACACCCCAGTTTCTAGCCCAGCCACCTGCCAGTTACATGGCCACAGTGTTAGTTTGTGTATAGAACTTTATGAATGTAGGTGATTTGAGTCAAAAGAAAGTCATCCCTTCAAATTTGTACCCATTAGTCTTTGCTATGCCTTTTGCTTTGGGACTAGATAGATGTCATTGGTCCCACAGAGATGATGGGTTTCATCGCCAATGTTATGCAGAAAGTCAGTAACTGATGCTAGAAACTCCTAGGCCTATTGCTAGGTTTTTGTTTTGTTTTATTTTGTTTTGTTTTTGTTTCTTGTTTTTGGTTTTGGTCAAAATAAAAAATACCAGTAGATATGTGAATGAACCCTAATGGCCCTTTGGATAACTTTTGAATGAGGTTTATGTGGCAATGGAGGCAGTAGGTTTGGAGTCAGTGATATGCTCTTAGACATTCCTCGTAACTCAGGTGCTGTATGTTACGGAATCAGCCATCATCTATAGGATGCTTGTCAATGAGAAAAGAGAGCAAAGGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGTGGTGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACAGCCCCAGCTAGGTGTGCATGCACACAGAAGGCAAAGGTCCTTCCTGCATTGCTATTTGTGGCATGGATCCTCTACATGAGCTCAGACCTTCACATTGTGCCTTTTTCTCTTCACACCTCAGCTTTACCATTTTTATTTTGATGACAATTTAAGTCCTTCTGACATTGCTATACTGAAGTTTAGAATTTAAGTAGTTTCGCAAGGTTCAATTGTCTGCAGGAAGTTTTGTTTGGGTAAAAATGCAGAGCCTAGATTTAAGTCCTTTGCCTGGTTGTATCTCTTGGCACATTCATGTGGCCCAGGCTTCTCCTTATTGTGAACTATACTTCAGTACTAGATCAAGTATTTGTTTTTACTTATATTTCTTTCTGAATTCAGACTGGCTCTTTTTGTTTTGGCATTTGCCCTTTCTGTAGCTTCTTAAAGTCCTGAATGCCTCATCCTAACAAATTGGGGCCAGTTGGTTAACCCAGATGGAGCACACCTGACTTATTTGCTATGCCTGAGTCTGTGTGTCAGTCAGAAAACAACAAGATGAATTCTACTAAAGCATTGCTAGAGACTTTTTCTTTAAAGAATTTGGTTTTTAGACTTTCAGTTACATTCATGTTTTCCTCAGTCTTTTTAATTTTTCTTCTCTGGTCTTTCCTTAACATTCTTTCACCCTGTGGCCTCTGAGCCTCAGAAGGCGCCTCTCTTCCATGTGCCATATAACTGACTTCCAAAGCTGGTGTGATTTGATGCCCCATTTTTCACATAAAAGATATGGTTTTTAAATGTTACTGTGATGCAAATCTACTAAAACAATGCTTTATTTTGGCTGTAAGGTAAATATGTCTTTTGGCCTTTGTAAAGCTGTTGCATGTGGGGTATCTCCCTCTGATCATCTGGTGCTCTTGAATACCTGCTGTTGCTGCTTTGTGATTTCTCCTAGGGCAAACATCAGCATAAAGGCAGGGGTAGATTTCAAATCCTCCTTAGTATGCAGGAGTTTGCGAGGCCACAAGAACGTATTAATTACAAATTAAGTAAACAATTAATCTTTCCAGATTTGCCATGCCAAATTAATGGTAGCCACTGAGAAGACAAACACCTGGTGGTGCTTTGATTAAAGCTGTCTTTCTGAGAGTTGAGGCCCACACAGAAAGCCTTATATCCTGACATTTTTTTCCTTTAATATGTCATGTGCCATATGCATTAGGCACTTTAGGACACACATGTTTAACTGGCATTGATTTAGATTTTTAGAATTCATGCCTGCTCTCTCGGATGTCATTCTGATGTCACTCTATGGCACAGGCCTTTTATTTTAGAGCAGAAAGCATCATGTCTAAGATAGAAGAGCACTTGATTGTGAGAGACCTGTGGGCCTCTTCCAGAACGGTGTGAAGTGGGCTGACTAATCTGGAAATGGTTAATGATAATTACTGTAAGAATTCTTAACCTGAAATTTTTATTGGAGTCCTCTCCGTTTCTTTTCTCTGTAG
Seq C2 exon
GTTTGCCCAAGAGAATGGTTCTGTTACCCGTTATGAAATTCCCAACATATCCTGTTCCCCACTACTCATTCTTTTAGCAAATGACAGAAGCTCATTCCTATTGAACAACAATACAGTACAATGCAGAATGTTAGAGAAAAAAGCCTTTTTATCCTGCTTTCTTTGAACACATACTTACTTGATCAAAATTATTTGTAAAGAACATCTTTCCTACTTTTTGATTTTAACAAATGCAAATCCAGTTCTCTAAAACTTGAAAACAAACAAAAGAAACCAGTTCTGTGAAACGGTACCTCATTCCTGGAAATAATTTATACCAGCCCCTTCGTTGTAGGGAAGTCTAGCAGCTCAAAGTTGACGTTTTAAGAGAGTATCAGATTATGTAAAGTTAAATTTGTGAAGGATGTATAGAGTCTCAACACTGATCACAATAAACTGCTTTGTTGTAACACAGAGTACTGCCTGGTTCCTGATGCAGTCACTGATTGGTATCTGAGTGATATGTGCTTGCTCCAGGGCACTGGAATTTGGGCTGTAGTTATTTTTTTTTTTTAAATAAAGTAGAAACTTTTCATTTAAACCTTTACTTTGTAAATAACGAAGTGTGTAATTAAAGCCAATAAAATATGGGTTTGAATATTGTTTTAGCTTATTATTTTTGATTTGTTTTGTTATCAAATTTCAAGGAATTGAAAACTAGTAATAACTTGGCCCTAGAAACCCATTTATTTGTAAGCAAGCCGCTAAAACAAAGCAAAGATGATTTCTCAATCTATTCATTTTGTAAGCTCTATGTACTCCAGTTGTACAAGGGCATCCCCTGATAAGGTTACATTCTGTTATCCCAGCATTGCTTATTAAAATGATGGCACCATCCAAAGATGGGGAAGGAGGATTGTGATTATCTTAGTTTACGAATTTCCAAGTTTAAAAAAAAATAAATTAATCAATCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010150:ENSRNOT00000066377:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]