MmuINT0154410 @ mm10
Intron Retention
Gene
ENSMUSG00000026915 | Strbp
Description
spermatid perinuclear RNA binding protein [Source:MGI Symbol;Acc:MGI:104626]
Coordinates
chr2:37583156-37586554:-
Coord C1 exon
chr2:37586510-37586554
Coord A exon
chr2:37584107-37586509
Coord C2 exon
chr2:37583156-37584106
Length
2403 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
TCCGTTTCTTTTCTCTGTAGGTT
3' ss Score
12.37
Exon sequences
Seq C1 exon
GTTACGGAACCCCATATGGTTACAGCACAGCTGCCCCTGCATATG
Seq A exon
GTATGTACACTTCCTTACTGATTCCTCCTCTTAGCAAATTTGTCACAGCAACTCAAAACATTGTACCCAGAGTTTCAGTAAACATGTTCGAGGATCTCAGATCTGATCATTCAAGGGGCCCAACTTAAATTCCCTCTGAAAATGCCACAACCTTGTGGTTCTTGGTTTGGTCGAAGTTGCTCTTCTCTCTGCTTTGCCTGATTGGAGAACTGCTTGTTCTTATTGCCTGTTTCTGACCATATTGAAATTATATATTTGAAGTAATTATTCTTACAGCCAGCCTATACTCCATTCAAAGGCTACTGAAGGGCCACACTCCAGTTTCTAGCCCAACCACCTGCCAGTTACATGGCCACATTGTTAGTTTGTGTATAGAACTTTATGAATGTGGGTGATTTGAGTCAAGAAAACAAAGTCATCATTTCAAATTTGTACCCATTAGTCTTTGCTATACCTTTTGCTTTGGGAATAGATAGATGTCATTAGTCCCACAGAGATAATGGGTTTCATTGCCAATGTTACCTGTTTTTTTGCAGAAAGTCAGTTTTTTGCAGAAAGTTAGTAGCTGATGCTAGAAAATCCTAGGCCTATTGCTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTGGTTGGTTGGTTAGTTTTTTTGTCAAAATAAAAAATACCAGCAGATATGTGAATGAATCCTAATGGCCCTTTGGATAACTTTTGAATGAGGTTTATGTGGCAATGGAGGCAGTAGGTTTGGAGTCAGTGATATGCTCTTAGACATTTTTTGTAACTCAGGTGCTCTATGTTACGGAATCAGCCATCATCTATAGGATGCTTGTCACTGAGAAAGAGAGCAAAGGGTGTGTGTGTGAGCGTGTGTCTGTCTGTCTGTCCACACAGCCCAACCAGGTGTGCATGCACACGGAAGGCAAAGGTCCTTCATGCATTGCTGTTTGTGGCATGGATCCTCTACATGAGCCTTCACATTGTGCCTTTTCCTCTTCACACATCAGCTTTACCATTTTTATTTTGATGACAATTATAGGTCCTTAAGACATTGCTATACTGAAGTGTAGAATTTGAATAGTTTGGCAAGGTTCAAATGTGTTCAAGAAGTTTTGTTTGGGCAAAATGCAGAGCCCAGATTTAAGTCCTTTGCCTGGTTGTATCCCTCGCCCACTCATGTGACCCAGGCTTCTCCATATTCTGAACTATAGGAATCACAGATGTGGGAGTTCAGGATTAGTATTTGTTTTTATCTATATTTCCTTCTGAATTCAGACTGGCTCTTTTTGTTTTGACCATTGGCATTTGCCCTTTCTCCAGCTTCTTAATGTCCTGAACACCTCATCCTGACAAATTGGGGCCAGCTGATTAACCTAGGCGTAGCACACTTGACTTACTTGCTATACCTGAGTCTGTGTGCCAGTCACAAAATAACAAGATGAATTCTACTAAAGCATTGCTAGAGACTTTCTTTAAAAAATTTGGGTTTTAGACTCTTCAGTTACATCCATGTTTTCCTCAAGTCTTTTTAATTTTTCTTTTCTGGTCCTTCCTTAACATTCTTTCACCCTGTGGCTTCTGAGCCTCAGAAGGCGCCTCTCTTCCATGTGCCATATACTGACTTCCAAAGCTGGTGTAATTTGATGCCCCATTTTTCACATAAAAGATTGGGTTTTTAAATGTTACTGTGATGCAAATCTACTAAAACAATGCTTTATTTTGGCTGTAAGGTAAATATGTCTTTTGGCCTTTGTAAAGCTGTTGCATGTGGGGTTATCTCCCTCTGATCATCTGGTGCTCTTGAATACCTGCTGTTGCTGCTTTGTGATTTCTCCTAGGGTAAACATCAGCATAAAGGCAGGGGCAGATTTCAAATCCTCCTTAGTATGCAGGAGTTTGTGAGGCCACAAGAACGTATTAATTACAAATTAAGTAAACAATTAATCTTTCCAGATTTGCCATGCCAAATTAATGGTAGCCACTGAGATGACAAATACCTGGTGGTGCCTTGATTGAAGCTGTCTTTCTGGGAGTTGAGGCCCACACAGAAAACCTTATATCTTGACATATTTTTTCCTTTAAAATGTCATGTGCCATATGTATTTCTTGAGTCACTTTAGGACAAAAATGTTAATCACTACCATTGCTTTACATCTTTAGAATTCATGCCTGCTCACTCAGATGTCATTCTGAGTGTCATTCTATAATACAGGCTTTTTATTTTAGAGCAGAAAACATTATGTATCAAGATAGAAGAGCAATTGATTTGTGAGAGATTTGTGGGCCTCTTCCAAAATGGTATGAAGTGGACTGACTAATCTGGAAATGGTTAATGATAATTACTGTAAGAATTTTTAACCTGAAATTTTTATTGGAGTCCTCTCCGTTTCTTTTCTCTGTAG
Seq C2 exon
GTTTGCCCAAGAGAATGGTTCTGTTACCCGTTATGAAATTCCCAACATATCCTGTTCCCCACTACTCATTCTTTTAGTAAATGACAGAAGCTCATTCCTATTGAACAACAATACAGTACAATGCAGAATGTTAGAGAAAAAGCCTTTTTATCCTGCTTTCTTTGAACACATACTTACTTGATCAAAATTATTTGTAAAGAACATCTTTCCTACTTTTTGATTTTAACAAATGCAAATTCAGTTCTCTAAAACTTGAAAACAAACAAAAGAAACCAGTTCTGTGAAACGGTACCTCATTCCTGGAAATAATTTATACCAGCCCCTTCGTTGTAGGGAAGTCTAGCAGCTCAAAGTTGACGTTTTAAGAGAGTATCAGATTATGTAAAGTTAAATTTGTGAAGGATGTATAGAGTCTCAACACTGATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTGCCTGGTTCCTGATGCAGTCACTGATTGGTAGCTGAGTGATATGTGCTTACTCCAGGGCACTTGAATTTGGGCTGTAGTTATTTTTTTTTTAAATACAGTAGAAACTTTTCATTTAAACTTTAACTTTGTAAATAACGAAGTGTGTAATTAAAGCCAATAAAATATGGGTTTGAATATTGTTTTATCTTATTATTTTTGATATGTTTTGGTATCAAATTTCAAGGAATTGAAAACTAGTAATAACTTGGCCCTAGAAACCCATTTATTTGTAAGCAAGCTGCTAAAACAAAGCAAAGATGATTTCTCAATCTATTCATTTTGTAAGCTCTTTGTACTCCATTTGTACAAGAGCATCCCCATGATAAGGTTACATTCTGTTATTCCAGCATTGCTTATTAAAATGATGGCACCATCCAAAGATGGGGAAGGAGGATTGTGATTATTTTAGTTTACGAATTTCCAAGTTAAAAAAATAAATTAATCAATCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026915:ENSMUST00000072186:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types