GgaINT0124689 @ galGal3
Intron Retention
Gene
ENSGALG00000000906 | RALGPS1
Description
NA
Coordinates
chr17:11020853-11023600:+
Coord C1 exon
chr17:11020853-11020960
Coord A exon
chr17:11020961-11023549
Coord C2 exon
chr17:11023550-11023600
Length
2589 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
AAATTCTGTTTTTATTGCAGAGC
3' ss Score
8.3
Exon sequences
Seq C1 exon
GGTAGTAGCAGCTCAGATTCTCTGGAAGGGCGAAGTTCAGATTATGCCAATAAGAGCTATGATGCTGTTGTATTTGATGTATTAAAAGTAACTCCTGAGGAGTTTGCT
Seq A exon
GTAAGTAGAAATATTTATTTTGCATTTATGCATGTATATTCTTCACAGCTTTCAGAATATAAAAAAACAAAAACCACTCTATGAGCTATTTCATGATTTAATATTTCAGTGCTGAATTGACATATTGTATTTATTTTTTCTGCTTAAAGTTATTTGACTTTTTTCCCAGTGTTTCAGAAGATAGTACACTTGGTAATAATACATAATGCTAGGTATGTGTATTTCTGTTGGGTTTTTTTTGTTTGCTTTGTTTTAATTGAAACCACAAATGCTCATATTTTCTAATGAAACATCAGTTTCTCAGAAAAATGTTTCTTAAAAACAGTAATGAAACTCTGTAGTCATTAATACTGAGTTTTCAGTACAAAACAGAAAGCAGAGCTGCTGTTTTGGCTTGAGTCTGATATACGTTTCATGGTTTGTCTCTTACTGTGTAATTTACATGTTAACTTGCTGGGGAACCAGAAGGAGTGAGGATGACAGTTATTGAACTTAGTTCAATGTTTCCATGAATATTCTGATCATCAAAACAATGTTCCATCCATTTGTCTTAAGATCATACCTGTAATGCTTGCTGCCTTCACAGAAAGGATGTGGAGGTGTTCAAGGCCAGGCTGGATGGGGCCCTGGGCAGCCTGGTCTAGTATTAGTTACGGAGGTTGACGGCCCTACCTGTGGCAGGGGGGTTGGAGCTCGATGATCCTTGAGGTTCCTTCCACTCCAAGCCAATCTATGATTCTATAATGATATGGCTACATTGTTCCTGTAAGTTTGTCACTTTGGGGAAAAAAAAATGCAATTAATCTTTTTTTCAAACAGTAATCCAGAATATGTAGATGAAAACTGTTGTTAGGTAGAAATGTAAAAATACTTGGATGGCAAATCTGCATCAACTCAGCTTAAAAAAAAAATGGCCTGCCATTTTGGCTCCTTTTTGGCAGAGTTTTACAATTCTGTGTAAAATCAGAAAAATAGTTGAATCATTGACTAATCTTATATGAGGAGACAATATGAAGTCTGAAGGTATCTCAGAACACTGTATGTACTCAACACAAACAAAATGCATTTGTGGTGATTTCTGAAATGTATTTATAAAATTAGCTGATTGACTTAAGGTTGCATGTAATTCACAACTCAGCAGTTTTTGTTACATTCAGAATTTTTACTGCTGTTAGTTTGAGACAGAAACTTGTTGGTGAAGGTCTTTATTTAATGGTACACTTTAAGAACACACATATGCATACAAATGTTACGTCATTTAAGACATCTTTTAGCTCCCAAGTCCAAACACTTCTAATCCTTTTTTCTTTCTCTAGTTCCAGTGGTGATCAAAAGCCATGGTAACTTTCCATTTAAATTATGATGATTTCAGTTATCAGCCATGACCAAGAATCCTACTGATAAAGCTGTTTGTTTCTTTGTAGTTGCTGGTGTTGATTTCAGCATGATCTTGCAGTCTTTTAACATGAAAACTTCTTTAGCCAGAGAAGTTGTTCTTGTCCTAGATTGAAAACTTTTCATGATTTACCTGATCTTCTCTTTTAGTGACAGCTAAGAGTGGTCAGAGAGTGGTCATCTAGGAATTTGTAGCAACATCTTCTTTAAAAATAAATAACAATTTATAGAAGGAAATTTTTTTCATTAGGCTCATGTCTAATATATATACTAATACCATATATAGTATTAAAGCATATATATTATATTATTATAGTGTATATATATATAGTATATAGATTATATATTATAGTATAGTATACTATACTAATAGCAGAAACTGTTTTAATATCTGAATTAAATGGAAAGTTACCATTCTTAATTGGTTCAATAGAGCATTCTGTAAGTTGGTTTGGAAGTTACTGCTTCCTTGTAGAAAAACAGAGCAGCCAGCAATGAAGCTTTTCTGGGGAAAGATCCAAAGAAGCATTCATTAGAGGCACTCTTTTAAATATTAAACCATGGGAATTACGAAGTTAAAAGCACAGTAAATTTATATACCTACAGTACAATTGAAGAACCTATTGTTTAAATATATTTTACAGGATTTCAACATATACAGTGTAATTAGGAAACAGTTAAAGTATCTGATAGCCAGCATGCTGAACAGTCTACAAGTAACAGCATTATCATGTCTTATCAGGAGACACTCTTCAGTAACTAAAAATGTGTGACCTCTTTAAAGCATGTTCCGATTATACCTAGTTAATATCATAATGCATTATTGCATTTCAAGACAGTGATAGTCTGCTTTCTGTGTGACGGGCAAATATTTTTTCCTGCCGTTTCTGTTATGTCAGTAAGTGCACGAACCCTTTAGACTCTGAGAAACCTGGTTTTAGTTCTTGCTACAGGTACTGAAAGCCATCACCTAGTTGCAGCAATTAAATGTAAAGGAGCAGAACAACTTGTTTCCACTCAGCTAGCATTCTTGTGGTATGACAGTCTGTACAGGGTGGCCTAATTCTGGGTTGATCATTTCTGGTCTGTGGAGAAAATACTACTGTATGTTTGAAGAGCCATATCAAGCCAGATGTAAATATGTAATTGTTAGCTCTTTATATGGGATGGATTAAAATTCTGTTTTTATTGCAG
Seq C2 exon
AGCCAAATTACGTTAATGGATATGCCAGTATTTAAAGCTATACAGCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000906:ENSGALT00000001330:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PU(4.1=22.2)
A:
NA
C2:
PF0061714=RasGEF=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]