BtaINT0122040 @ bosTau6
Intron Retention
Gene
ENSBTAG00000023843 | RALGPS1
Description
Bos taurus Ral GEF with PH domain and SH3 binding motif 1 (RALGPS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001193100]
Coordinates
chr11:97710559-97722762:+
Coord C1 exon
chr11:97710559-97710666
Coord A exon
chr11:97710667-97722711
Coord C2 exon
chr11:97722712-97722762
Length
12045 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
CCAGTTCTCTTTTGTTGCAGAGC
3' ss Score
9.08
Exon sequences
Seq C1 exon
GGCAGCAGCAGCTCAGACTCTCTGGAGGGCCAGAGCTGCGACTATGCCAGCAAGAGCTACGACGCCGTTGTCTTCGATGTCCTGAAAGTGACTCCCGAGGAGTTTGCC
Seq A exon
GTAAGTGTCAGAACAGATGTGGGAGGCTGGGCACCGCCACAGGAAGCTCGGGGGTGGGGGGTGGGATGGTGATGACTGCTCACAGTTGTTTGCTCAACTTGGAAACAACCCAAGTATTGCTGAATAAAGTGTTCTTTATGAATACTTCATGAATCCCATGGAGCATTAAAAAAGGATGCTATCTGGGTGGGCGGGGGGAGAAATTAAGGAAAATTCCATAGACAGAGGAGCCTGGAGGGCTGCAGTCCATGGGGCTGCAAAGAGTTGGACACAACTGAGCGCACACTGTATATAAAATAGATAATCAGAAAGGACACCCAGGGAACAATACTCAGTGTCTCAGATTAACCTATAATGGAAGAGAGTGTAAAAAAAGAATGTGTGTGTGTGTGTGTAAGTGTAACTGAATCACTTTGTTGCACACTTGAAACTAGCACAGCATTGTAAACTATATTTCAGTAAAAATTCTTGAAAATTTAAGTGCCTATAAATATTTTCAGAAGATGTATTTTAATACCTGATTTGGAAAAATTGTTTGAGGAGAAAAACCTTTGTTTTTCTATCTGTAGAAAAACCTACATATATACCTATCTATATACACCTATCTATCTATACCTATCTGTATACAGAATTAATTTGAATACTTGTTGCCTTGGTGTGAAGATCAAAATTAGAAAAAGAAATAAGGAAGAAATGTATGATGCATATTTTATACAATTATATAAAAGCAAAATAATAAATGGCTTTGAAAGAGTAAAAAAAAAAAAAACAAGGTGAAATTTAACCACCTTGGAAGGCTTATACAATACATATGAATAGTAAGTGAAAGGAGCCAGTCAAACCCTGGCTAGCCAGTCACACCTTTCCTAAAGGAAATCAACCCTGAATATTCATTGGAAGGACTGATGCTGAAGCTGAAGCTCCTGTGCTTTGGCCACCTGATGCGAAGAGCTGACTCATTGGAAAAAATCCTGTTGCTGGGCAAGATTGAAGGCAGGAGGAGAAGGGGACGACAGAGGATGAGATGGTTGGAAGGCATCACCACCTCAATGGACATGAGTTTGAGCAAATTCTGGGAGATAGTGAAGGACAGGGAAGCCTGACGTGTTGCAGTCCATGGGGTCGCAAAGAGTCAGACACGACTGAGTGACTGAACAACAAAAGTTAAAAGCAGCAGGTTACCACACAAGTTATAGAGAATAGTGCTGTTTTTAAAAAAGCATGCACAACACATAAATATTTATATTTACATAAGAAAATATTTGATGTTTACATATTCACAAGTATCTGAATATCTATATAGCCAAATATTACTGACTGTGGTTTCTGGTTGTAAGAGTCTAGAAGATTGGAATTTAATTTCTTTTTATTGTGCTTTCTATATTTTCACAATGACTGTTCTCTACAATGATAGACAATATCATTTGAATGGATTTTGTAATTACACATGTTTCAGAATCGTTTTCCCACCAGCCAGTGTGTTGCTGCGGGTCTGGCCGTGGGGCTTTGTGTCAGAGGAGCAGACCAGGCTCCTCATAGAGCTGTGACCTGCTGTCTGCCTTTTGCACTGTGAGGGTTGTCGGAGGACGCTGGCTCTGGGGTGACCCGACTGCAAAGTGCTGACTCACGCTGCACGTCTCTGGGGAGCCACCGGTGTTGCTGACCATGGCCGCTTATTCCAGGGCCCCTTGCTCTGACAGGGTTGTGCCCTCTGGGGGCCTGTGGAGCCAAGTGTGCCACATCTCCTTGCTCTGCCATCACTTGCTCCTACGTTTACCTTGTTGCAACAAGGCAAGCCCCGCGCTGAGCCCCACACGTGGGTCGCCTCTCAGTGTGTCTGAGGGAGCCTTTTAGAACCTGTGTGAAACTCTCTAGAGGTCCGCTCGTACTAGGAGACCTGGCCTTCCTCTCAAGGCCCCTAGTGCCCCGGGGTCTGGCCGAGCCTCCTCTCGTGCCCCTCCTTGCTATCCAGCCGCACACTGGCTGCAGCTTTCTTCTCTAGGCTCACCCGACATCCCCCTGCCCCGGGGCCCGGTGCTGCTTCTTCCTTCTGTCCTAATGGCGCTTTCCCACACGTCTCACCATCTCTCTTAAGATGTCAGCCCTGGAACAGGCATTTTACCCGCTAAGGTAGCATCTCTACAGCTCTGCCCTGACCCTGCTCTGTTTCCTTCGTATCTCTCCAGACATTACATTCTGTAATAGTGTTTCACATGGCCCTTCTCCACTAGAATGCCAACTCCCAAAGAACAGGAACTTTATCTGACTTCTTCACTGCTCTCTCCCCATTGCCCAGAACGGTGCCCTACTCATAGTAGGTACTCAGTAAATACATGTTGATGAGGTGAATTCAGTCCTTAGAACAACTCAATAAGGCAGATTATTAGCTCCTGACTTTCTAAGAAAGAAATAGAGGATCTAAGAGATTTTTTTTTTAAACCTGGATCATAGAACCAGATGTGGGCAGAGCCAGGTCTGAAACCTTCATCTTTTGGTTTCTCACCTGATGCTAGGTGATGATAACAAGGGCAGCTTCCACTTTGGAGCACTTGCTTTGTCTAGGTCTTGTACTAAATGTTTACATGCATTAATCTAACTTAGTTTTCACAATAGGCTTGCAAATTAGGTCTATTTATTATTCCCTGTATGTTGGTGAGCAGGTGAATACGTAGAGAGGAAAGTCGGCCCTTCACGTGAATAGTAAGCGGCACTGTCTGTCTGGGCTTTAAAACCAGGACTTCCGGCATCCTGTGTGTGTGCTCAGTAGCTCAGTTGTGTCCGACTCTTTGCAGCCCCATGGACTGTAGCCGACCAGGCTTCTCTGTCCATGGAATTTTCCAGACAAGACCACTAGAGTGGGTTACCATTTCCTCCTCCTGGGGATCTTCCTGACCGAGGGATCGAACCTGAGACTCTTGCATCTCCTGCATTGGCAGGCAGATTCTTTACCACTGGCACCACCTAGGAAGTGATTTCTTAGACCAGCCTTTGATTTCTTAGACCAACAGAAATATAGTCTGAGTCACATATGCAATTAAAAAATTTTTAATAGCCACATTAAAAAGGTGAAATTGTTTAAAAAATATTTTTTATTTAACTTAGTATGTCTAAAATGTCACTTCAATCTGTAAGCAACATGAAATTATTGAGGTACCTTGAGTTATTTTTTCACATTAAATCTTCAAAGCTCAATGTGTCTTCTGAAGTTGGCGTGCTGGCGACACTTCAGATGCTCAGTAGCCACGTGTGGCCAGTGAGCACTGTATTGGGCGGTGCAGAGCTAGTCTGTCCTCTCAGGCATCAGGCTGTAGTGCCTCTGTCTCCTCTAGAAGACGTCATGGACCTTGCTGGCTGATGACGTAGCTTCTATAATCTATTTGCTTTTATTTGCTTGTTGTATTTTTGATTATTTTTTTTCCCTTGCTTCGTGAAAAGGACGAAGTAACAATGAGGTTTAAAAGTCCCTTTGCTTGGGAGTTCCCTTTGGCCTAGTGGTTAGGATTCTGGGCTGTCGCTGCTGTGGCCCATGTTCAGTCTCCCAGCTGGGGAACTGACATTAGGCAAGCCGTGCAGCACAGCCAAACAACAACAACAAAATCCCTTTGCAGTTACTCGCCACATGGAATAGCAGAGAAGGGGCTTCGCAGGTGGTGCTAGTGGTAAAGAATCCACCTGTCAGTGCAAGAGACTCAGGAGACCTGGGTTCGATCCCTGGGTTGAAAGCATCTCCTGGAGGAGGAAGTAGCAACCACTCCAGTATTCTTGCCTGGAAAATTCCGCAGACAAGAGGGGCCTGGTGGATGCATGGGGCCACAGGGCCGCAAAGAGTTGAACACAACTGAGCGACTGGGTGCAGGCTGCACCCAGAACAGCATTGTCCAGCAGGACCCCTCGGCAAGACTGCGGGCCCGGTTTTCTAGTCTCAGCCCTAGAGTGTTGCTCCACCTGCCCCAAGCTGGGAAGACTGAAGGGAAGGGCGGTGAGTGCTTTGAGAGCTCAGTGTTAAAAATTGGCTGCTCCTGCCAGAGCCAGTATGTCCTCAGCTTAGATGTGAAGCCAGGTCCCCTGGAGTCTTTGGTCTTTGGGGAAGCATTGGAGTTGCCAGGTGTTGGAACTGAACCAGACCACCTGGTATTTTAGTTTCCTGTCTAATAATACGAAAGAAAGAAAAAAGCCAGTCCCAAGAGTCCAGTAAAAAAAAATCACTTGAGTGATTCTGGGAAGATGGCAGTGGCAGCAGCATAGTTCTTTATTCTCCCTGAATCCCCACATAAAAACATCCATAACAGCTAGATAGCAAACCCTCAAACCCTTGAGCAGTATTTACAGTAAAACTGGGTGTTAAGTTATCCCTATCAAATCTCAAATACCAGTAGCTTGAGGATATGCCACTGGTGTCAACAAGCCCTGCAGAGCATCAGCTTCAGTCTAAAGAAAGCAGAAGTACGTACTGGGGCATTTGACAGACTAGGGGATAGAAGAACCCCAAAATTTCCAACGGGAATTCACCGGAAAGTTCAGCAGGTCAACGTGAGAATAGCAACTGAAATTGAGAGGAATTTTGACCACTCAGATAATGGACGGCTAGAAGAGATCTGTGAACCAACCCTTAAGAGCTCTTGAAACCAGTCAACCAGGGCTTACTTCCAGAACAAGGGTCTGTACCAAAAAGGAATTCAGCTTGGGAGTAGACCAAAGATGATCAGGATAGGGAAAGTTACAGTTAAGGAAAAGGTAGGTTTAAATGAATTTGTGTTTGTGTGTGTGTGGAATCTCAAAAAGCAGCTGCCTGTTGTTGAAGATGACATGAAAGTAAAAGAAAAGCTATATGAAGTTCGGAAAGCTACCAAAAATTACTGATGTCAAGTTTTTCAGTTGTTACAAGAAAAACAAAGAGTAAGGAGAGAATCCTGTAGATAATGAAAGCTTGCCAGAGAGACATGCCACAAAACAGATGAAAACTGTAACTTTCTATTTCAAAATTAGCTAAGAGAAGAAGTTAAGATCACACTGTGAGTCATGAACAACATAAATCTGACATATATAAATTTCAGAAATGAGGTGGCAGAGTTAGGAAAACACTGGAAATAAAACTTATTTTGAAAATGAAAGTTGAGCACAAGAATAGATAAACATAACAGAAAATGCCTTAAGGGAGGAAAAAGTTTAAGATCAAAATAAATGAAGAGATAAGAAGACCTTGAAAAATAGCAATAAATATTAATGATAGGCAAAGAAGACCCAACATCGGATACATATACCAACATACCCAACATAATATAAATCCCTGAAAGAGGAGAATAAAATACAGGGAAACTGAACAGGTAATTAAACTATAAGAAGATGGTCACAAAATAAAAGATTCAAGCCTACGTACTGAAAGATTATACTATGAGGCAACCCGGAATGGTCAATACCAATAGTCTTGGTAGACTACTTGGGTGATAAAATTATAGAGGAACTTGAGGGAAGTCAAGATAGTGGTTACTTTTCACGGAGGGAGGGACTTGTGATTGGGACAGGGCACATGGAGGAACTCTGGGGTGACTCCTCTTTTTTTTCTTAATCATGGAGAACTATATGTAACACAAACATGACCATCTCAACCATCTTAAGTGTACGGTTCATTTGTGTTAAGTACATCCACAGTACCATGCAGCCCATCTTCAGAGCTGTTTTCATCTTGACGGCCCCAAACTCTGTACCCCTTAAACAACTCTTCATCCCCGCAACCTCCACCACTTACTTTCTGTGTCTGTGAATGTGACTACTGCAGGGTTCTCACGTAGATGGAACCATACAGTGTCTTTTTGTAGCTTATTTCGCTTAGCATAATGTCTTTGAGGTTCACCTATATAGTCGCATGTGTCAGAATTTCCTTTCTCTTTTAGGTCAAATAATATTCTGTTGTGCGTGTATAACACACGTTTGGGCCCATGTATCCATCTATTGGAGTGGCTGTTTCTTAATGTGGGTGGCGGTTTTAAAGTGTTCGCCTCGCAGTAAGTCATCAAACCATGCATTTGTTTAGCGTGGTTTTCTGTTAATGTGTCATTTTACAGTAAAAAGGGTTAAACTCCTTTCGGAGGTTGTAGTTGTTCTAGTGGGGGTGCTCTGTAGCTAGATCTCAGGCTTTCTCCCCAGTGGCTGAAAGCTGAACAAAAAGCAGTGCTGGAACTTGTCTTTATTATCAATAGATCGTATGTATAAATTTAATCCTCTGTTCTTAAGGCTGCATAGTATCCCAGAGTCTGGATGTACCATAATTTTTTCCAAAAAGTTCCTTTTTTGATGGTCTTTGAGATTACTTGCATATTTTTACTACTACAAATAATGGTTCAGTAAACATCTATATTCATCTCTGTATCTAAATGTAGATCTTTCTCCATATGTCTTCTTATAAACCAGTGCTTTTCTTTCTGTAGGTGTTGGGATTGCTGAGTCGACAGTATGCGCATTTCACCTTATAGGAGATAATATCTAAACATAATGCTTGATCCTGGATGAAGAAAAAATTGCTATAAAAAACAGGATTGGGATAATTTGAAAATTCTGAATGTGACTGTATATTAGATAATACTGATGTAACAACAATAAATTTCTTGAGTGTAATAATCTTATCATTATGTAAGAGGGTCATCTTGTTCTTGGGAAATCAACTGCTGAAGGATTAAAAGGTGAAGAGTCATAATAGCTGCATTTTACTCTCAAATGGTTCAGAAAAAAAAATTATATACTTATATAATTATTTACGTAAAAATAAAGTAAATGAGGCCAAATGTTAATAAATATCAGTAGTGAAGCGAGGTGAAAGTTTATAGAGTTTATCATGTTATTCTTGTAGATTTTTTCTAAGTTTGACATTAAAAATGAAATTAAATGTTAATGTTTTTAATAGGTTACTATCAGATTACTTTGCAAAAAGAACAGAGCAACTCATAGCCCCATTAGTTGTGATGGCTGTTGGACCACGAATGGTGTCTTCCTCTTTAATTTGCATTTCCTTGACACAAGATTCTAAAATTGTCAGACACAGCAGTTCTAGGAGGAGAGGCAGGAATCCATCTTTGCAGCCGATTGCTTTTTGTTCCCTGAAGCCATCCTAAGGCTCATTCGGAGTGATCTCAATGCAAATTTATAGATATTTTTTATTATAAGACAGCCCACTGTTTCTGCCAACAACGTTTTTGTTTATTTGGACCCAGTGTGGGTGGAGCAGGGAGCCTTCCTTGTACTAAGCTTGTGGCTGGGAAGAGGGGATTTAGTCAGCCACCATTAGAGGGAAAACATACGTTCAGCATATGTAGAAACCAGTTTGTTTTCTTTTTGGCTGATTTGCTGTCACTTATCCACAGAAAACCACCTTGCTCTCTTGCTTTAGGGCCGTATTGTGATGGACTCTGCTAGGTCTCTTTGTCCTAAAGGCCGCATCTCCAGAGAATTGTCCTGTAATATGTGGAGATTGGCCGTTTCTTTAAAAAGCCTGGATTTCTAGGGGGCCCTGGACTAGGAGGAAGGAGATGGGGGAAGGGGTTAGGGTGAAGGAAGTTGTTGCCAGGCGACCAGTTTAACTGGACATCCTGTTGCTGTTGCTCAGTCTGTCAGTCATGTCTGACTCTTTACGACCCCACGAACTGCAGCACGCCAGGCTCCTGTCCTTCACCGTCTCCTGGAGCTTGCTCACGTTTGTGTCGGTGATGCTATCTAACCTTCTCATCCTTTGCTGCCCTCCTTCTCCTTTTGCCCTCAGTGTTTCCCAGCATCAGGGTCTTTTCCAGTGAGCTGGCTCTTCACATTAGGTGGCCAGAGTGTTGGAGCTCCTGTACTCTGGACATCCTGTTCAGTTCAGTCACTCAGTCATGTCCGACTCTTTGCGACCCCATGGACTGCAGCACACCAGGCCTCCCTGTCCATCACCAACTCCTGGACTTTACTCAAACTCATGTCCATTGAGTCGGTGATGCCATCCAACCATCTCATTCTCTGTGATCCCCTTCTCCTCTCACCTTCAATCTTTCCCAGCATCAGGGTCTTTTCAAATGAGTCAGCTCTTCGCATCAGGTGCCCAAAGTATTGGAGTTTCAGCTTCAACATCCATCCTTCCAATGAACATTCAGGACTGATTTCCTTTAGGATGGACTGGTTGGGTCTCCTTGCAGTCCAAGGGACTCTCAAGGGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTCGGCACTGCATGAAGTGGACATCCTGTATGAAGGCTTTATTTTCAAAAACAAGGAGAGGCCATTAAGAGACTTGTCATGAGACCTGTGAGATGGTGATGTGTGTTCTCATCACAGGCACATGCTCCCATGACAGCAGGAACCAGAGGGCCTCATTGTCTCCTGTTCCTGTCGAGGCTGTGCCATACTCCTAGGAGCCTGGGGACTAGCTGTGAAAAGGGACAGGACCCTGATCTTGCCCTGCAAGTCCCCACTCCTACACACACCCTTCCCTTCGGTAAAACTACCTGCCTTGCAGTGCTCCGGCTTCAAAGGGAGGATTACTCAAAACCTTACTCAACCTTGCTACATGTGTTCGGCTTTGTAGTAAAATGACATGTAATTTATACCCCAATGATGTTACCTATCTATCGATGTATTCTTGCTCTGGACACTGCATCCTTTTGGGCCAGAACTGAGAATATAGAAATGGGAGAGCTTCTTCTGAATAGTTTCTGATGGTGTGTTTGGGACCAACCAGTCTATTTTCAGCCTGGTGACCTCTGTTCTGGTTTTTCTGGTTTATCTTGAATGAAATAAGCACATTTTTGACTGATGGTCTGAGCAGGGATAATAATATTTGAAACTTGAACCATCTGAAAAACTATGAAACGTAAAGTTACTGTTTTAATACATGATTTGGAAATTCATGTAGCAAACCCTAGAACTGATGGCAGGATCAAAAGGAAGTTTTCTCATTTTCACATTAGCAGACTTTTGGTTCTTTTCCTAAATGACACTGCAAACATCCTGCCAGTTCTTCCAGATTGGGAGTAAACTTGAATTGCGGGAGAGATTTCCAAGGCCCTCTGAGCTCTCAGCTCAAATCTTATGTTTTCACGAGGTCTTTCTGCTCCCCAGGATGGCAGAATTAATCCACGTGTGAGGAGCACTTGGCCAACAATCTCCTTGAGTCTGGCAGGAGAAATGCCAGTCTGTTTGCACCTGGGATGGAGCTCTGGGCCCTGTATCTCTGGTTCAGACACGCAGGCCCACAGGCTTCACCAAGCAGTAGTCACTCACTCTGTGCTGATGTCCACGGCTGGCTTGCTCTCGGTGGATGGACCCAGAGGTGGAACTGCTCGGACTCTGCATTGCCATCCATGTCACTACTGAGCTTCCAGTAGCGGCAGCATTTCACCTCAGTGCCCGTGACGAGCCCCAGCCCCTTGGGGGGACAAAGCCACCTGTTTATTTTCATGTCCTGCTCAGCCCCGGGGATGGTATGCTTTGGGATGCATCCCATGCTTCCCAGAAATCCACTGATCTTGGGTCACCTTTCAGTTGTGCCAAGAGGTGACCAGAATTCTACCTAAGCCCTGGATTGTGGTTACAGTTGACATACCACGTGTGTTGCTATTTTTCTCCAATGTATTCTTGACATCAGGGCTTCCCTGATAGTTCAGTTGGTAAAGAATCTGTCTGCAATGCAGGAGACCCTGGTTCAGTTCCTGGGTTGGGAAGATCCACCGGAGAAGGGAAGGCTATCCACTCCAAAATTCTTGGGCTTCCCTTGTGGCTCAGCTGGTAAAGAATCTGCCTGCAATGCGGGAGACCTGGGTTCAGTCCCTGGGTTGGGAAGATCCCCTGGAGAAGGGAACATCTACCCACTCCAGAATTCTGGCTTAGAGAATTCCATGGATTGTATAGTCCATGAGGTTGCAAAGAGTCAGACACAACTGAGCGACTTTCAAAAAAAAAGAAATTCTTGATATGAGGCTTTTTTCTCATGACAATATAACAGCCTCCTTTAAATATTTTTTAGAGCAGCTTTGAAACATGGATGTTCAAACATGTTAATAGTCCATTATTTCCTATCTGGTGTTTTGGGCAGGAACCATATACCAGAACATGAACCCATCTATTTGACTCCCCTTTTGCCAAAAAATTATGATACATAAGCATATAAATATATAATCTTTGTGAATATGCAAGACAAGAGGTACAGAATGCCTGGCACCTGTGAACGCACACACACAGTCATATATGTACACACATATACGTATATAGAGAGAGTACCAATTAGGTGCCAGGCATTCTGCTCCTCTTGTCTTGAATTCTCACAGTGATCCTATAAGACAGGGATGGTTGTCACCATTTTCTAGATGTGTCAGCTGAAACCGGGAGAAGTTAAAAGTCATGTGTCAAAGAGAATGTTGCTGTTAAGTGATGGTGTCCAGACACACGCTGAGCCCTGTGAATTCCGGAGCCCACATCTGTTCACTGCACTGTGTCCTCCCAGATGCCCTGTGGACAGTGGACAGGTGTCTTCTCTCATTCATGGGCATCCGGAGCTCTCAGCTCTCCTTGCCCTGGCCTGTCACAGAAGCGTCTGTTGACTGTGTCCTGGCTTCCCACGTGGCATCTGGAGAGAGGTATAGGCCATGTGAAGGCAGCCCAGGCCATGCCTTGGCCTGCAAAACTGTCAGCAATGACACCTTCTCTTACCATCACCTGATGAGCTTATAGCGATAGGAACAGCCTTTTAACTAGATGTGTGTTTTCTGTATGGACAAAATTAGTGCTTCTTAGTGTGGAGAAGGAAATGGCAGCCCACTCCAGTGTTCTTGTCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGTTGTCTCTGGGGCCGCACAGAGTCAGACACGACTGAAGCGACTTAGCAGCAGCAGCAGCAGCAAGCTAGGTTTGATAAAAGACCAGTTTCTTTTCTTTCCAGTCAGTAGTCATGAAGGGACGTGAGAATTGGACCATAAAAAAGGCTGAGTACTGAAGAATTGATGCTTTTGAACTGTGGTGCTGGAGAAGACTCTTTTAAGAGTCCTTTGGACAACAAGGAGTCAGACTAGTCAATCCTAAAGGAAATCAAATCTGAATATTCAGTGGAAGAACTGATGCTGAAGCTGAAGCTCCAGTACTTTGGCCATCTTATGCAAAGAGCCAACTCATTGGAAAAGACCCTGAATCTGGGAAAGATTGAGGGCAGGAGGAGAAAGGGACGACAGAGGATGAGATAGTTGGATGGAATCACTGAATCGATGAACATAGGTTTGAGCAAACTCTGGGAGAGAGTGAAGGACAGGGAAGCCTAGTGTGCTGCAATCCATGGGGTCGCAGAATTGGACATGACTTAGCGACTAAGAGTGAACAACAGCAAAGGACTAACACTTTAAAAATATATATAACAAAAATGTCATGGGGATCGCTATAAAAGTTTCCAAATGCTTGCTCTCAAATTCTGTAGTTCTCTCATTCTGGGCTGGTGGAATAAACAGTTTGTGATCCAACACTGGTCTGTGGGGGCGTCTCAAATGGGACTCCACCATATAATTTAGAGGTGGCTTAGGCTTCAAAAGAAATGTACACTTTCTATAAGCCACAATTTTAAAAAAAAATCACTTTAGAGTAATAGAGAGTGTCTCTGTTTAACATTCTAACTTATAATATTGTGTCTGCAACTTTTTTTAAGTTGTAGAAGTAACTTAGACTTGAAACAAAAGCTCAAATAGAATGAAAATACCCAAACTAAAAAATGTACCCTCCAAGCTACTATTATCAATCCCTAAATTGGGAGTCCATCTCACATTCAAGAAGGAAGGGTGTGGATCAAGATTTATAAAGAAGAAAGGGATGGGAGAGGTGTTTTCAAAGTCTACCCAATTTTTTACTTTATCTTGATTTTTATTTCAAGGGGGAAAGTGTGACTTCTCAGAATGTGTTATTATTCTGTAGAGTTTCAAAGTCACATGGCAGCTGTTTTTGGTTTCTAGTGTCTTCTAACCCCAGTTCTCTTTTGTTGCAG
Seq C2 exon
AGCCAGATCACGCTAATGGACATACCCGTGTTTAAAGCCATCCAGCCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023843:ENSBTAT00000061364:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PU(4.1=22.2)
A:
NA
C2:
PF0061714=RasGEF=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development