GgaINT0124690 @ galGal3
Intron Retention
Gene
ENSGALG00000000906 | RALGPS1
Description
NA
Coordinates
chr17:11023550-11025655:+
Coord C1 exon
chr17:11023550-11023600
Coord A exon
chr17:11023601-11025571
Coord C2 exon
chr17:11025572-11025655
Length
1971 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
GAAGGCTTTTTGTTTCCTAGGAA
3' ss Score
7.32
Exon sequences
Seq C1 exon
AGCCAAATTACGTTAATGGATATGCCAGTATTTAAAGCTATACAGCCTGAG
Seq A exon
GTAGGTTTTTTTTTTAACTGTTTACATCTTTGGGTTTTCAGTGCTGTGGAAATGTAACCATTTATGTAAAACTATTTCATTCTGAAACACTCAACTTCTTGTGCTCTGCTAGCACTGTGAGTCTAGTATCTAATAATCCAGCCTGGTTTACTTTTGATTTGTCATCTGTCTTCAAAGGAGACAGCTATGCCTTTTTACAAACTCTGCTATATGTGAATGTTTATTACAAAAACAAACAAACAAAAAAAATAACAAAAAAAAAACAGTCAAAATGGACTACACTCCTTTCGGAATTTGTCAGTCCATGTTTCACCTGTGGAAGGCTTAAATGGTGAAAGATAGAGATGTGAGATATGTTGGAACTCGAAACACGTTTTCTTGTACTCACGCAGTAACTTGGAGCCATCTGTATCTGGAGAAATTTTTCAGTATGTGCAAAGTGACTTTTGGAGATGAAGTTTCTTGACTCTCTGCCTTTTGGTGTGAAGGCCTCTAAAGTTAATAGAACACGTTTGGAAAGTTGAGCAACATTGTGATTCAAACTGAAATTTGTGATTCCAAAACCAAAAGAAATTATTTAGGTTTGGTGTTAGGGAAAACTCATTTTTCAGTATGTGCGTGTGACCACTTGTCAGATCTGTGTTAAGACTGTATAGATAGATATGTGGTAACTTGAGCCTGTAGTTAAACAGAGGCAGGCTCTGTAAGTGTATCTGAAGCTGCCAGAAGTACCTACTGGAAAATGAACACTTTCTGGCAAAATCTAATATATAGTTACCACTACAGGTTTCTTCTGATGCATAATTCAATGGCTAATTTATTGAGAAAATCTCTAATTGTTTTGGTTTTTAGATCTGTTAACTTTATACTTCTAAGAAAAATTTCTGCAATTTGTTTTGCTATTTATATGAAAGAGTATATTTTGCTGTGCAGCAATTGATTTTTCTTTCTATTTTGAACTGGGTTGACTTTGAATTAGTCTCTGTGATGAAAGAGCATTTAAAAATGCTTCTTGGACTGAGATTAAACTATGTGCCACGCTCACAATCTCTTGCTTTATTAGCACCAAAGTACTATTTTTAAGTACTTGCCACACTTCAGTCAAATCTGGCTAAACTCTTATGCCTTAAAATACAAATAAACAAACCAAAAAAGCAAGAAAAAAAAACAAAATCTGGAAACAAACAAACAAATAAAAGCTATAACCCAAACCTATAAAGACTGTTAATTGTCCAGCATTCAAATCATGAATTCTTTTGGTCTGAGTATTACTTACAGAGATTTCACTTTTTATTTTTTATTCTGTAACAATTGTAAACATTAATATTACAGTTGCAAATTTGTGTTCTTTAAATGGTTTAGAACTCACATTTTAATAAAACAAATTAGAGAGTAAGCATGCTAAACTGTGATATATTCATGAAAGTTTTACCTACTGTAATAATGAGGATGACCATCAGGAGTGGTAGCTGTTAACCATCTCATGTTGCACAGTTCTACTGTTCTTTAGCTTTTTAAGTTTCTTAAAAAAAAAACAACAACATAATAATTCTGTAATTGTAATATTGCTCACTGATATGGTTAGCTCTAACTTCAAGTTTGAAGTAGTTAAAGTTAGAAATTAACAATGTCTTTTATTCCTTTGTCCCCTAATTTGTTTCTGTGGGGTAACCCTGGACTAAATCAAGTGTGTAATTAAATTTCAGAGACATCAGTTGTGACTGCCTGCTTTGTGTCCCTTTGTATGAAAATTAATAATGATGTTTATTTTTTTTCCTCAGTAGCAGGAGAATATATAAATCGCATCAAATATGTATACCGGGAAAAGACAGAAGTGTTTGGTTAGATTGGTTTTCATCAAAGTGATGCCTTGGATTGGTTTTAGCAGTACATGATAGATCTCTTGTTCAGTTTTCTATACTTCTTAACATTTTCAAAAGTTACTGACTTTGAAGGCTTTTTGTTTCCTAG
Seq C2 exon
GAACTAGCCAGCTGTGGGTGGAATAAGAAAGAAAAGCATATCCTTGCTCCAAATATTGTTGCCTTCACTAGGAGGTTTAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000906:ENSGALT00000001330:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(8.2=100)
A:
NA
C2:
PF0061714=RasGEF=FE(13.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]