GgaINT0124720 @ galGal3
Intron Retention
Gene
ENSGALG00000008819 | LRSAM1
Description
NA
Coordinates
chr17:1934760-1936160:-
Coord C1 exon
chr17:1936061-1936160
Coord A exon
chr17:1934848-1936060
Coord C2 exon
chr17:1934760-1934847
Length
1213 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
ACAAATATGTTTTCTTGCAGCCT
3' ss Score
8.25
Exon sequences
Seq C1 exon
CTGCCATGCAACAAATGCTGGCTGAGAGCTACAAGAACAAGCTCATCCAAATGACCTATGAATCTCGTCGGCAAGACCTTGTCAGCCAGGCCTGCTCCAG
Seq A exon
GTATGCTGGGAGATTTCTGGGGCTGGAGATGCTGTTGTTGTAAGATCCTTTCTTGCCAGCAGTCTCTGGTGTAATTCCCATGTAAACAACCAGGAATTTCTGCAGCTGCTGGAATGCAGCAGGACAGCTCTGTGTGAGCCAGGTGACAGTGCAAATTGAAGAATCATGGTTAAATGAATCACCTTCTAACCACAAGAGTATGAAATGTTGATCATACTTTGAATTACATTGTCACATTTTTATACTGTTTACCTTACACATCCTGCAAGGTATGGAGGATGAAATCAGACTGATCTTTTTGTTATTTGGTTACTCAGTGTCAAACTGTAGCACAGAGCCTCTTAGGACTGTCTTCTAGAGGATTACGTTTCTTTTTCCATCATATTAAAAAAAATTCTAATGGAGAAGATAATAATTATGGTGCAGAACTTCTCCTAGTGGAAGCCAGAGCCTTTCATTTGTTTCACTCTTGTGGAATTTTGGTAGCTCTGCTGGACAGATTACAGAGCAGGCTGAGGTTCTTCATGGTTGGTGATACAAAGTCACATTCTGTTTCTTAAAAACAAGGCTCTGTTCTCAGATGTGGTCCTCCTTGCAGAGTCTTTGGAGAAGTGAAGCAAACTGAGAAATTAAGGGGAAAAAAATGGAACTTTTGGACTTTATTGCCCACAGAGCTATGAGAGCTTGTGACATGCAGGCTGGGATGTGTCACTCCAGGAACCAGTGTGAAAATTTCCATCTCCGTGAGCAGTGAAATTGAGCAGTGAAAATGAGCCAGGTGGAATTGAGCAGTGTTACAACAGAACAGTTGAAAATTTCACATTCTGTGATATGTGAAGGAGGCACAGGATATTAAAAACCCTCTGGACTTTAAGGATTATGTGGGCACAGTTTGTGTATGTGTAGGGCACTGCTATAAGTGAAGACAATTCTAGCTCTTTTTATTTACAAGAATACGAGAAATTTAATCTGGAGGTGTCTGACAGACAGACAGAATTAACATTGTGCACCCGTGCTCTGCCCAACAGAGGGCAGTGGGTAGACACAGTCCTGCCTGCAAGTGCAGGGAATACATGACCCCACTGTCTGGACCTTCATCAGCACAGCTTTTCCAGTGCAGATGTGCAAATTCATCACCTGAGCAGCTTGCTGGGGCAGCCACAGCCCCTGTTTGGATTTGCAGTAACTCCTTGACAAATATGTTTTCTTGCAG
Seq C2 exon
CCTGGCTGAGATGGATCAGAAGTTCCAGCAAATCCTGGCTTGGCAACAGATGGATCAGAACAAAGCTGTTAGTCAGATCTTACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008819:ENSGALT00000014334:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF136461=HEAT_2=FE(34.0=100)
A:
NA
C2:
PF136461=HEAT_2=FE(29.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]