RnoINT0087323 @ rn6
Intron Retention
Gene
ENSRNOG00000022312 | Lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:RGD Symbol;Acc:1564403]
Coordinates
chr3:11986852-11988264:-
Coord C1 exon
chr3:11988165-11988264
Coord A exon
chr3:11986940-11988164
Coord C2 exon
chr3:11986852-11986939
Length
1225 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTGTGCTGTTTTTCTGGCAGCAT
3' ss Score
9
Exon sequences
Seq C1 exon
CCGCCATGCAGCAGATGCTGACCGAGAGCTGTAAGAGCCGGCTCATCCAGATGGCCTATGAGTCCCAGAGGCAGAGCCTGGTGCAGCAGGCCTGTTCCAG
Seq A exon
GTAAGGTAAGGAGTGTGCGTTCAGGTGAGGGCTCCGAGGGAGTCAGCAGGGAGCCCAAGACTTGAGAGAGCTGGATTCTGAATTCTTGGTCCACCCAGGTTTGCTCACGTTACCAGGGCCAGCCTCTGGATTCCCTGGGCAGACTCAGGAGTCAGGCTTAGTCAGTGATAAAGTGAGGGCGGCCCTCACCTCGGAACCCATCCTGTGTGCCAGGTGCTGGCCTGTGTGTGGGGGTGGAAGTTATCTGTCCTGCTTTACATCAAAGCTGAAGTCTGAGGCCATGGTCACAGCAAAACAAAACTAACAAGAAATTCAAGTCTCTGCTCCACTTGGTACTAGCACTTGGTAAGCAGAGGCAGGAAAATCAGGGGTTCCACAGCAAACCACAGAGTGAATTCAGACCCATGGGAGCTACCTAAGATCCCGCCTCAGAACTCACAAACTCACTTGCACTCACGCATGCGTTCTCCCCCAACCCCCCACCCTCTCTCTAAGGCTCAGCTGTTAAAAGCACTGGCTGCTCCTATGGATGGGTTCAGTTGGTAACACCCACATGAACTCCAGTTCTGAGTGATCTGGTGCCCTCTTCTGGTCTCCATGGGAACTGCACACATATAGTACACGGGAAATGCCCATGCATCAAAATTTTTAAAGTCTTTTTTTTTTTTTTTTTTTTTTGGTTTTTTTTTTTCAAGACAAGGTTTCACAGTGAAGCCCTGGCTGTCCTGGAACTTACTCTGAAGACCAGGCTGGCCTCAAACTTAGAGGTCCAAGTCCTGGGATTAAAGTTATACACCACTACTGCCCAGCCAAAAAATAAAAAAATTAAGTTAATGTGAAAGCTAAGGCTGTGTTATACCTGGGCAGTCTGAGGTTACAGGTTCTGTGCCAGTTACCAGCCTTGTAGGGCTATACACAGAGTGAGGAAATGCTGAGAGGAACATTCCAGAAGCTGAGTGGCTCACCAGGGCGTCAAGAGGTGGTTAGGCAGGAGCCCAGCATGCACTTCAGGGTGTGTTGCGGAGGTCCAGTGGAGACGATGGACCCAAGGCCCGGTGACTCTGCCAAATGGAACCTCTGCCGTCCTCCTTGTCGTCCACAAGATTCTACACACTGCCCTGCCAGGAGCGCTGAGTAGTTGTTATCTCTGTCTCCTCCAACGTGCCCGGCACACAGTAGGTGCTCAGGAAATACGCAGTGAGTAACTGTGCTGTTTTTCTGGCAG
Seq C2 exon
CATGGCTGAAATGGACAAGCGGTTCCAGCAGATTCTGTCATGGCAGCAGATGGACCAGAACAAAGCCATCAGCCAGATCCTTCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022312:ENSRNOT00000060186:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]