MmuINT0093474 @ mm10
Intron Retention
Gene
ENSMUSG00000026792 | Lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:MGI Symbol;Acc:MGI:2684789]
Coordinates
chr2:32938797-32940340:-
Coord C1 exon
chr2:32940241-32940340
Coord A exon
chr2:32938885-32940240
Coord C2 exon
chr2:32938797-32938884
Length
1356 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTTTTTTTTTTTTCTGGCAGCAT
3' ss Score
9.22
Exon sequences
Seq C1 exon
CCGCCATGCAGCAGATGCTGACGGAGAGCTGTAAGAGCCGGCTCATCCAGATGGCCTATGAGTCTCAGAGGCAGAGCCTGGCGCAGCAGGCCTGTTCCAG
Seq A exon
GTAAGGTAAGGAATGTGTGTTCCCAGGTGAGGGCTCCGAGGGTGTTGGCTGGGGTCCCGAGACGGGAGCGAGAGCTGGACACTGAACTCCCTGGGCCGTCCCGGGTTTGGACAGATTACCAGGGACAGGTGATGGACGGCCAGCCTCCGGATTCTTCCATCCAGACTCATGAGTCAGGGTCAGACAGTGATAAAGTGAGGGTGGCCTCTACCTCCAAGCCCACCTGTGTGCCAAGTGCTGGCCTGAGTATGGGGATGGAAGTGTTATCTGTCCCGCTCTACATCAAAGCTGAAGTTGGGGACGGGGCGGGGGCATGGTCACAAACAAACAAACAAACAAAAACTAACAAGAAAGTAAAATCTTTGCTGGCTTGGTGCTCAGGCTTGTAATACTAGCACTTGGTAAGTAGAGGCCGGGAAATGGGGAGTTCCAGAGCAAACCAGAGAGTGAATTCAGCACCTGAGCTACTGAGACCCTGCCTTAGAACTCAAGCGAGCAAGTGCGAGTACTTGCCTGCTTTCCAGCACCGCACCCTCCTCCCTCCCCACCCTCCTGCAGAGATGGCTCAGCTGTTAAAAGCACTGGCTGCTTCTGTAAATGGGTTCATTTGGTAACACCCACATGAACTCCAGTTTGAAGTGATCTGGTGCCCTCTTCTGGTTTCCATGGGCACTACACACATATAACGAACTTACATTATATGTAGGCGAAATACCCATGCATATAAAATAAAAATTTTTAAAGTCATTTAAAAATTTTTGTTTGTTTGTTTGTTTGTTTTTCAAGACAGGGTTTTTCTTTGTAGCCCTAGCTGTCCTGAAACTCACTCTGTAGACCAGGCTGGCCTCTAATTTAGAGATGTTGGGATTAAAGGTGTGCACCACTATCGCCCAGCCAATAAAAGAAAAAAAAGTTTAAGGTAATGTGAAAGTAACTTAAAGCTAAGACTGTGCTGATGTTGGCAGCCTGAGGTTACAGGTTCTGTGCCATAATTACCAACCGTGTTGTAGGGCTATACAAAGAGTACGGCCAGTGAGGAAATGCTAGTAGGAACATTCCAGAAGCTGTGTGACTCTCCAAGGTGCTGTGGTTAGGGAGGAGCCCAGCATCCACCGCAGGGGGTGTAGTGAAGAAGGTCCAGTGGAGGGTTGGACTCAAGGCCCGGTGACTCTGCCAAATGGAAGCTCTGCCACCCTCCTTGACATCCTCGTCCTTGATGCCCTGTCAGGAATGTTGAGTGGTTGTTTATCTCTGTCTCCTCTAAGGTGCCCAGCACACAGTAGGTGCCCAGCACACAGTAGGTGCTCAAGAAATATGCAGTGAGTAACTGTGCTGTTTTTTTTTTTTTTCTGGCAG
Seq C2 exon
CATGGCTGAAATGGACAAGCGGTTCCAGCAGATTCTGTCTTGGCAGCAGATGGATCAGAACAAAGCCATCAGCCAGATCCTTCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026792:ENSMUST00000113200:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types