GgaINT0124858 @ galGal3
Intron Retention
Gene
ENSGALG00000021274 | F1NJE7_CHICK
Description
NA
Coordinates
chr17:1325560-1325936:-
Coord C1 exon
chr17:1325799-1325936
Coord A exon
chr17:1325725-1325798
Coord C2 exon
chr17:1325560-1325724
Length
74 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
CGTCTCCTCTCCTTGGGCAGGTG
3' ss Score
10.32
Exon sequences
Seq C1 exon
CTGTCTTCTAATTACCCCGAAGAGAATCCTGAGCGACTGCCTAAATACTGTGCCAATGCCAACTACATCCTCACACTCCTCCTTGATGCCTACAAGTTCAACGAGACCAGCTGGAACAACATCTTCTTCCAGATGAAG
Seq A exon
GTCAGCAGGGAACTTGGCCAGCAGGTGGGAATGTGCAGCACTGGGCTAACTCAGCGTCTCCTCTCCTTGGGCAG
Seq C2 exon
GTGGGGAGCACCAATGTGGGCTGGACTCTGGGCTACATGCTGAACCTCACCAACATGATCCCAGCTGAGGCTCCAGTGTGGGTGAAGGGGCACACACCCTCCCTGTGGGCTGCAGCCATCGCCTTCGTCACCTTCACCTTGGCCTTGGGGCTCGTTGCACTGGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021274:ENSGALT00000014517:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(10.5=100)
A:
NA
C2:
PF0115012=GDA1_CD39=PD(6.5=50.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGAGACCAGCTGGAACAAC
R:
CCAAGGTGAAGGTGACGAAGG
Band lengths:
181-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]