GgaINT0124880 @ galGal3
Intron Retention
Gene
ENSGALG00000002699 | VAV2
Description
NA
Coordinates
chr17:7736617-7737260:-
Coord C1 exon
chr17:7737172-7737260
Coord A exon
chr17:7736634-7737171
Coord C2 exon
chr17:7736617-7736633
Length
538 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TTTCAACATTTCTCTTGCAGGTT
3' ss Score
11.47
Exon sequences
Seq C1 exon
AGGAACGTTCTACCAGGGCTATCTCTGCCCAAAATGTGGAGCTGGTGCTCACAAAGAGTGCCTGGAAATCATTCCTCCCTGCAAGATGG
Seq A exon
GTGAGTTACTTGGCCCCGTCAGCAGCTTATGGCATTGAGGTTAATGGATGTGAATGATCCCGAAGTTCTTCCCCCTAAAGTGCTATCAGCTGCTTGTTAACACCTAAAAAACATCTGATGATACTGTCAACCGCCTCCCAGGGCTGCAGCTCAGAGGGGCTGGTGGTTTCATAAGCAAATGAACTGACCAAACCACCAAAAATCAAGGAGAGATCCCTGGCCTCGAACTAACCCCGGCTCTCCTGTGGTGACCCAGCGCAGCGCTGGTGCTCTGTGCCGTGGGGGGTTTTCATGGAGCAGCATCAGAGGGGCTGTGTTTGGGGATGGAATGGGGAAGAAGTCTCAGAGCTTGGTGCAAGTGAGGAATCCGTGCCCAGGGCTGATCCCCTCCCACCGAGTGTGGAGCTGAGGGGTGACCCCACTCCCCTCCTTGGTCAGGTGTCAATGCTGCTTTATGGATCCTCATGGCATCAAGAGAAGCAGAGAATGGGTTTGCTGCCTGATAAACTAACAGCCACTTTCAACATTTCTCTTGCAG
Seq C2 exon
GTTCTTCAGCAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002699:ENSGALT00000004255:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.167
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(57.7=100)
A:
NA
C2:
PF0013017=C1_1=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]