RnoINT0162647 @ rn6
Intron Retention
Gene
ENSRNOG00000007422 | Vav2
Description
vav guanine nucleotide exchange factor 2 [Source:RGD Symbol;Acc:1306285]
Coordinates
chr3:5826969-5829092:-
Coord C1 exon
chr3:5829004-5829092
Coord A exon
chr3:5826986-5829003
Coord C2 exon
chr3:5826969-5826985
Length
2018 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
CTGATCTGCTTCCTTTCCAGGTT
3' ss Score
11.64
Exon sequences
Seq C1 exon
GGGTACCTTCTACCAGGGATACCTGTGTACCAGATGTGGTGTCGGGGCACACAAGGAGTGCCTGGAGGTGATACCCCCCTGCAAGATGA
Seq A exon
GTGAGTAGTGCATGGGTTTGGTTCCCTTGATCCACACCCACACGCTGGGCACAGGGTATTCTCAGCAGGAATGGGGGAGCTCCCGCTCTCTGATGCCAGGCACAGGAACTGGACCCAGGGGGTTAGAGTGTGTGATTTGGGAGTGCACGTGGGGTTTTATCAATGGCGTCCCACCTTATAGGGACAGCTCTGCATGGGTAGGGGCACCTGACGAGTGCCAGGCACATTCTCTGTGCTTCAAATGAGAGGTCCCTGTCCTTACCACTCACTGGGCATGTACTTCACTGACACAGGAACTGCCATCCGGAGGACGCCAACTTGCTCTGAGTCCCATGGCTGAGCCTAGAATTTCTCTTCTAGCGGGATAGCTTTGTCAGCCCTCTGCAGTGTGGCTCAGTCCTCCCATGCTTGACAGCGTCTTGGGATCATTGTCCTGCTATTGGTCTGTCTGGCCCAGTAGATGCCACCTCCAGATCAGCCCCAGCATTGTCTGGACAGTGGCACTGGCTCGGTCAATGTCGCCCTCTTGTGGCCATGAGCCCCTCATGCAAGGCAACTGCCACCGTCGCTTCCTACTTTGTGTGCGATTCTAAAAGTTAGCAGCAAACTTATTTATTAGAATAGGATTTAGAAAAAGACAGAAAGTAAATAAGAAGACAGGACAGGGCATGGTGGCTCACACCTCTGTTCCCAGCACTCAGGAGGCAGAGGCACACATTTCTCTGAGCTTGAAGCCAACCAAAACTATAACGCGAGACTCTGTCTCAACCAAAGAGAAGAAACGTGGTCAGTGAACTTACTCAGAAATAAAAGCATGGCAAAAACATCCTTGGTCCTAGAGTGAGTTTGGGGCCAGCCTGGGCTACACGAGCCCGTCTCAAGGTGAACAAAGCCATAGGATTAACTGAAGGCAGGGTTTTGGTATATTTTAGGTTTCTTTTCTTTTCTTTCCTCTTTGTTTCTTTCTGTCTTTCTTTTTTGTTTAGAAAATACATTTTCAGAGTTACTTCCCCCCATCTTAATGAATAGATTCTTATTACCTGTAGAAGTTTGAAATGTAGAGAAGAAAAAGGAAGGGGAGGGCTGATTCATGTTCTTTTAGGCACCAACAGGCACACTGGGCATTTCCTTCTTATACCAGCGGGGTCCTCACCAGTATCCTCTGTGTCATTACAACCCCTGGCTGGCTCTAGACATTATTCCAGGGGGTTGTGACCCTCCCCCTCCCCTTCCTCCTCCCCTCTCCCGTGGGTCCCTCTGTCCTCTGCTAGGGGACAGTGTTACTGTCCAAGCTACTTTCCTTTTCCTAAGCTTTGGTTGGTTTTCCCCTGTGAACTGTGGCAATACCACAACTAAAGCAGATGGACTGTGTGACCCTCACAGGAACCCAGATGCCTATAGGGAGACACCAGCCCTTCCTGAGAGCCTTTTTCACCATTATGTGCCAAAAGAGTCTGTCAAAATCTCAGATGTTCCCAGAGCGGTCTTTGGCAATCTTAGTCGTGGTTATTGAGGTCCCACCAGTCATACACTGTAGCTGGAATGATCTTTGTTTTGACCCATGCTGAGGTGACTAGAATTCGTCTTCCCTCCCACACGACAGCGGAGTGACTAGTGTCCTTGAGTATGTGGGAGGGTCTTAGAGGAAGATGGCAACGGGGACCTGACCACCCACCTCTGTATCACCTACCTGTGGCAGGTATCACTGACAAGGTGTGGAAATTGTTTCATGAGCCCTGCCACATCAGGTGAGCCTGGCAGTTACCACCATTCACAGTTGGCCCAGGTAGAAAAGCCCAGTCTGTGAGTTCCCTGTGGTTCCTCAGAGCTAGAAGTCAGAATATGCCGTCAAGGTAACGTTCATAGATAGGAGGCTGGGTCTATGCGTGTGTCTGTGATCGGCCTCTGAATGGAGCCCCTGCAGCTCAGCCAGCCCCTCCAGTTTGGGGAATGCATACTGTGAAGGTCATCTTTCTGTCCAGGTTTCTGCTTTGACCCCTGATCTGCTTCCTTTCCAG
Seq C2 exon
GTTCGCCTGCAGATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007422:ENSRNOT00000009893:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(57.7=100)
A:
NA
C2:
PF0013017=C1_1=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]