MmuINT0172697 @ mm10
Intron Retention
Gene
ENSMUSG00000009621 | Vav2
Description
vav 2 oncogene [Source:MGI Symbol;Acc:MGI:102718]
Coordinates
chr2:27279191-27281989:-
Coord C1 exon
chr2:27281901-27281989
Coord A exon
chr2:27279208-27281900
Coord C2 exon
chr2:27279191-27279207
Length
2693 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
CTGATCTGCTTCCTTTACAGGTT
3' ss Score
12.06
Exon sequences
Seq C1 exon
GGGTACCTTCTACCAGGGATACCTGTGTACCAGATGTGGCGTCGGGGCACACAAGGAATGCCTGGAGGTGATCCCCCCCTGCAAGATGA
Seq A exon
GTGAGTACTCGGCAGTGTGTGGAGATGGGCCCCGCTGCTGCTCCTCATCGTGAGGACCACTTGTTCATGTCTGCCTTTTAATCCAAGGGACACACCTGAGAGGCACTGAGGCCAAGGGAAGGGATGATCAAAAGCTATAGCTGTAACTCCTCACCAAAGTTCTTGTGACTTTTCCGTCCGTCTCCTCCATCTCTGCCCCACACCCACACCCTGGTCCCAGGGTGTTCTCAGCAGGAATGCAGGCTTCTGTCATAAGTGGCCCCGCTCCTGGCTCTGGCACTATGTGCTTGTTCTCATGTCATTTTTCAGATGAGGTGGCTTGAGGCCGAGCCTCGCTGGTGCCAGGCACAGGAACTCGACCGCGGAGGCTAGGAGTGTGTGATTTGGGAATGCGTTTGGAGTTTTGTAAATGGTGTTCCATCTCATAGTGACTAGTGCTCGCCAAAAGCCGATGACAGTTCTGAGAGGTGTCAGGGCCTCACAGCTCTGTATAAGTAGTAGATCCTGCTGAGTGCCAGGATCCATTCTCTGTGCTTCAAATGGGAGGTCCCTGTCCTTGCCACCACTGGGGACATACTGCACTAACACAGGAACCACCAACCAGAGGCCAGCTCACTCTGAGTCCCCGGGGCTGAGCTGTGACAGAATTTCTTCTAGCAGGACAGCTTTGTATCAGCCCTCTGTGCAGTATGGATCAGTCCTCCCGTGCTTGACAGAGTCCTGGGATCATTATCTGGCTATTGAGCATACACCCTGTCACCTTGGTCTCTCTGGTCCAGATCAGCCCCAGAAATTGGGTCTTGACAGTAGCTTTGATTTGGTCAATGTCGCCCTCTTGTGGCCATGAGCCCCTCATGCACGGCAACTGCCATAGTTGCTTCCTACTTTTTTCGATTCTAAAAGTTAACAAACTTAGTTATTAATATAGAATTAAAAGAATTAAGGCAGAAAGTAAACAAAAGGATATAGGATTGGGCATGGTGGCACACACCTTTAATTCCAGCACTCAGAAGGCAGAGGCACACACAACTCGTGGTTGAAGCCAACCAAGGCTATAAAGCAAGACTCTGTCTCAACAGAGGAGAAGCAGTGTGGTCAATGAGCTTGTTTAGACATAAAAGCATGGTGGGTGAGTGTGTGTAACTTAGTAGGCAGAGTACCTTCAGGAGGTGGAGGCAGGAGGATCGGGGTCAAAAACATCCTTGGTTATAGAGTGAGCTTGAGGCCAGCCTAGGCTCTGTGAGACGCTGTCTCAGGATGCACAAACAAAGCCACAGAAGTAACTGAAGACAATGTTTAGGCATATTTTAGGTTTTCTTTTTGTTCTTTTTCTTTCTTTTTAGAAAATACATTTTCAGAGTTACTCCCTCCTCTTTTTTTTTTTTTTTTTTCCTTTTCTTTATTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGATCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACACCCGGCCTTCCCTCTGCCCCTATCTTAATGATTAAGATACTTATTACCTGTAGAAGAAGTTTGAAATGTAGAGAAGGAAAAGAAGGTGGAGGGACGAGTCAGAGTTCCTTTAGGCACCAACAGGCACGTTGGGCATTTCCTTCTTATATCAGTGGGGTCATTGATCATTACAGTGGTCATTACAACCCCTGGCTGGCTCTAGACATCGTCCCAGTGTCTAGACACACACACACACACACACACACACACACACACACACACACACACACACATGCTAGGATGTAACCCATGGCTCCATCGGTCCTCTGGTAGGGAATGCTGTTGCTCTCCAAGCTATGTTCCCTCTGATCTGCTCTAAGGCTAAGCGTTGGTTAGTTTTCCCCTGTGAACTGCAGCAATACCACAACTAAAGTAGATGGACTGTGTGGCCCCCATGGGAGCCCAGATGCCCCTAGGGAGATACCAGCCCCTCCTGAGAGCCTTTCCATGGAGAGTCCTTCTCTGGGCAGAGCAAAAGCTGTGTTGCCATCCTGTGGAACATTGCTACCCACCATCATGTGTGAAAGAGTTTGTAAAAAACTCAGATGTTCCCAGAGCAGTCTTCAGCCACAATAGTTGGGGTTATTGAGATCCCCCAGTCATACACTGTAGCTGTAATGACCCTTGTTTTGACCCATGCTGAGGAGGAAGGACCACCTACCAATGACTGGGGTATGTCTTCCCTCCCACATGATAGCTGAGTGACTAGTGTCCTTGGGTGTGTGGGACTGTCTTAGAGGATGATAGCAAAGGGGACCTGTACATCCACCTCTGTATCGCCTACCTGTGGCAGGTATCACCAACAAGGTATGGAAATTGTCCTGTGAGCCCCAGGCACCATCAGGTGACTCTGGCAGTTGTCACCATTCAGAGTTGGCCTGTGTAGAGAAGCCCAGGCTTTCTCATGTACGACTTCCGGTCTGCGAGCTCCCCATGGCTCCTTAGAGCCGGAAGTCAGAATATGCTGTCAAGGTAACTTTCATAGGTACGAGGCTGGGTCTATATGTGTCTATGATCAGCCTCTGAAGGTCAGCCAGCCCTCCAGTCGGGGGAATGCATACTGTGAAGGCCATCTCTCTGTCAAGGCTTCTACTTTGACCCCTGATCTGCTTCCTTTACAG
Seq C2 exon
GTTCACCTGCAGATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009621:ENSMUST00000056176:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.667
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(57.7=100)
A:
NA
C2:
PF0013017=C1_1=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types