GgaINT0124880 @ galGal4
Intron Retention
Gene
ENSGALG00000002699 | VAV2
Description
guanine nucleotide exchange factor VAV2 [Source:RefSeq peptide;Acc:NP_989473]
Coordinates
chr17:7057091-7057734:-
Coord C1 exon
chr17:7057646-7057734
Coord A exon
chr17:7057108-7057645
Coord C2 exon
chr17:7057091-7057107
Length
538 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TTTCAACATTTCTCTTGCAGGTT
3' ss Score
11.47
Exon sequences
Seq C1 exon
AGGAACGTTCTACCAGGGCTATCTCTGCCCAAAATGTGGAGCTGGTGCTCACAAAGAGTGCCTGGAAATCATTCCTCCCTGCAAGATGG
Seq A exon
GTGAGTTACTTGGCCCCGTCAGCAGCTTATGGCATTGAGGTTAATGGATGTGAATGATCCCGAAGTTCTTCCCCCTAAAGTGCTATCAGCTGCTTGTTAACACCTAAAAAACATCTGATGATACTGTCAACCGCCTCCCAGGGCTGCAGCTCAGAGGGGCTGGTGGTTTCATAAGCAAATGAACTGACCAAACCACCAAAAATCAAGGAGAGATCCCTGGCCTCAAACTAACCCCGGCTCTCCTGTGGTGACCCAGCGCAGCGCTGGTGCTCTGTGCTGTGGGGGGTTTTCATGGAGCAGCATCAGAGGGGCTGTGTTTGGGGATGGAATGGGGAAGAAGTCTCAGAGCTTGGTGCAAGTGAGGAATCCGTGCCCAGGGCTGATCCCCTCCCACCGAGTGTGGAGCTGAGGGGTGACCCCACTCCCCTCCTTGGTCAGGTGTCAATGCTGCTTTATGGATCCTCATGGCATCAAGAGAAGCAGAGAATGGGTTTGCTGCCTGATAAACTAACAGCCACTTTCAACATTTCTCTTGCAG
Seq C2 exon
GTTCTTCAGCAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002699:ENSGALT00000004255:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.167
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(57.7=100)
A:
NA
C2:
PF0013017=C1_1=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]