GgaINT0125290 @ galGal3
Intron Retention
Gene
ENSGALG00000002546 | Q90689_CHICK
Description
NA
Coordinates
chr17:8215839-8216823:+
Coord C1 exon
chr17:8215839-8215892
Coord A exon
chr17:8215893-8216775
Coord C2 exon
chr17:8216776-8216823
Length
883 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GTTGTTTTGTTTATTTGTAAAAG
3' ss Score
-1.83
Exon sequences
Seq C1 exon
GGTCCACGAGGGGAAAGAGGCCCTAGGGGAAGCACTGGGAAACCTGGCCCAAAG
Seq A exon
GTAAGGTTCTGGGGAGCCTGTGATGGCAATTAGGAAGAAAATTGCGTCCCAGAAAGTGTCAGCATCGGAGGCCATCTGCTTCATTGCCTTCCATTTCCCTTTTCTCCCTTTTCCATTTTGCATTTTGAAAGCTGAGCCATCCTGGCCTTCATTACCCAGCCAAATGCCTCATAACCCAACTGTGAAGTCTACGCACAGCTCCTAGAAACGTGCTGGCCTTCATTTCAGCAGATCAACTGCATGTGCAAACAAAGGCCCAGAAGGGGAGGGGATACCTTGCAGCAGGGACAGCACAGCCCTACATTCTGCTTCCCCTGAGCCCTATTTCTTGCACAACCTTGCACCTTGCTGAGCCGCTTTGCATGCACACTGCTGGCCAATGACTGCCCGCCCAGCACAATAGGCATTGTTTTGCCAGCCAATAGGGAGGCAAGCTCAGCTCCAGCACCTGCTGCAGAAACCAATTAAGTGACCATCAATTGCTGGGCATAATGGAAGCGAAGCTGCCGTAATGAGGCATTGTCACCGCCACGCTGCTGGCTTTAAAAATAAATGCCTTGGCTTTGTAGCAGCATGAATTTTTGATAAATACCTTGGCTTTGCTGCGGCATTTATCTCTCAGAGGGCGGCTGTTATCGGGTGGGAATAGCCTGAGCTCACTGATGTTATCTTTCCTGTATCTTTGTTAAGCAGTGTGGGGGGAACGAGCAGTTGCTCATTTGTCACTGGATGTGGCTCCCGGTATGGAAGCGTTGATGGAGAGGGGCTGGGCAGTCGGTGGGATGGGTGTCACCCGGGGTGGTGCTATTTGAAGCCTCTGTGCAAAGCAGCCGAAACGGTGATTTATGTATTTTTAATGGTGTGTTGTTTTGTTTATTTGTAA
Seq C2 exon
AAGGGCAACTCTGGTGGTGATGGCCCCCCTGGTCCTCCTGGCGAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002546:ENSGALT00000039035:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(26.6=100),PF0139113=Collagen=FE(19.1=100)
A:
NA
C2:
PF0139113=Collagen=PD(15.3=68.8),PF0139113=Collagen=FE(24.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]