GgaINT0125333 @ galGal3
Intron Retention
Gene
ENSGALG00000008995 | MAMDC4
Description
NA
Coordinates
chr17:941613-942107:-
Coord C1 exon
chr17:941842-942107
Coord A exon
chr17:941744-941841
Coord C2 exon
chr17:941613-941743
Length
98 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCC
5' ss Score
8.33
3' ss Seq
GCACCATCTCTCATGCTCAGGTT
3' ss Score
7.19
Exon sequences
Seq C1 exon
GAGGCACAGAGCTGCTCCTGCTTGGGCGGAGGGATGTCCCCGTGGGAGGGCTGGGGGAGATGGGAGCAGGGCGCTTCTCCTGGGGGTGCTGCGTGGGGCTCTGCCCCCACCTCTCAGGCCGTTTCCTTGCCCAGGGGCTTTCTTGGCCCTTCAGAGAGGAGAAGGACAAATGGTGGCTCCCGCCAAGGCCCGCACGCCTCTGCTGGGTCCCTCCGGCCTGGCCTGCGCCATGGAGATGAGCTACCGCCTGCACAGCGGCGCCCAAG
Seq A exon
GTATCCCAGCCCGGCTGCGCCCTGCCAGCCCTGTGGCTGCAGGCTGGGTGTTGCTGGGCAGTGCTGCCCGGGTACCCCGCACCATCTCTCATGCTCAG
Seq C2 exon
GTTTCCTCGCTGTTGCTGTCACGGAGCACTCCACGGACATGACGCACCTGGCCTGGCACACGCGGGGGCACGGCAGCACAGCCTGGGAGCACGTCCACATCCCGCTGGGGGAGAGGGCCCGGCCCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008995:ENSGALT00000014630:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.142 A=NA C2=0.216
Domain overlap (PFAM):
C1:
PF0062918=MAM=PU(41.3=55.6)
A:
NA
C2:
PF0062918=MAM=FE(35.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGCCCTTCAGAGAGGAGA
R:
GTCATGTCCGTGGAGTGCTC
Band lengths:
168-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]