HsaINT0124815 @ hg19
Intron Retention
Gene
ENSG00000007541 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:HGNC Symbol;Acc:14135]
Coordinates
chr16:632248-634108:+
Coord C1 exon
chr16:632248-632309
Coord A exon
chr16:632310-632882
Coord C2 exon
chr16:632883-634108
Length
573 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CGCTGCCCTTGTCCTTCCAGATA
3' ss Score
11.91
Exon sequences
Seq C1 exon
CTGGCGTGAAGTTCCGTGTCCTCCGGCACGAGGCCGGCAGGCCCCTCCGCCTCCTGATGCAG
Seq A exon
GTGAGGCCCCTTGTGGCCAGGACGCCCCTACGCTGCTGCCCCTGTTCTGGGACGGTGGGGTCAGCTGGGTGTAGTGTCTGGGTGGCACCACGCCAGCCTGCGATGAGGTACAGGGAGGGCCCAGTGGAGCTGAGGGGGAAGGCCCACGCGGGACCCCCTCCCCCTTACCCCCAGGGCCTGAGGACACTGGTGTGGTCCTGTGGATGGGGCCCATTCTGCCCTGTGTCGGAGGCGCCCTTGGCTGGCTGGGGCTGCCCTGGGCCCCACAGGGCTCAAGTTCTGGGTGGAACAGAACCGACTGAGTGAGTCCTGGGGTGGGGTGTGCGTCCCTGTGGCACGGCCCCTCAGAGTTGGGCAGCCCCGAGGGGAGATGCAGCTTCTGCCTCCCCCCAGCGCTCCCTTCTGGCTGCAGGCTCACTTGCCTCCTTGGGAACTGGGACTGGCTTCTCCCACAGGCAAGGGAATGTCTGAGACAGCACTGGCCCTGCCTCACAACTGCCCGCCCCCACCCTCTCTCTGCAGACGGGGTTGGAGCTCAGACCACCCCACTGACCGCTGCCCTTGTCCTTCCAG
Seq C2 exon
ATAAACCCACTGCCCTACAGCCGCGTGGTGCACACCTACCGCCTCCCCAGCTGTGGCTGCCACCCCAAGCACTCCTGGGGCGCCCTGTGCCGCAAGCTGTTCCTTGGGGAGCTCATCTACCCCTGGAGGCAGAGAGGGGACAAGCAGGACTGAGGGAACTGCTGGCTCGCCTGGCACCACCACACGGCCACAGCCAGCCATCTGCTCTGCCAGGGTGGCACCAGCTCAGCTGGCGCATGTCCTGTGCTTTGTGGACGCTGCTGTGTGCTCCTGAACACGGCAGGCCCTGCTATCACACCTTGGGCTTGGAGGTCATTGGGAGTGAGCAGATGTGGGGGTGGCCAGCCAGGCTGGCCGCACTCCATCACTGGCACTGCCTGCCTTGGGACCCGCTTCCCACCTGCTGCGGTCACCATGGTGGCGAGCACAGCAACCCCAGGTGTCCAGAGCACTGCCCCATGCCCACCCTGTGTACCCAGGTCCAGAGGGTCCGTCCACCACAGCAGCCCCAGGTGGAGGGCTGGTCTCCCTGGGGGCTCCCCAGTGGCTCTGCCCTGGCTGTGGGGGTGGAGGGACCTTGCCAGGATGAACCCCCCAGTCCCAGGCACCCTCTAGCTCCCTCAGCCGAACAGCACCCTGCATCTGGGGGATTGAAGCAGTCGCTGACCCCCGTCCCCAGCGGGCCCGGGCCCTCACTCCCTGAACCACACGGGGTTTATTTGCGGATGTTCCCTGGAGAGGTCGCTTTGTGAAGAAACCATCAGCAGGCTGTGAGCATCGCCAGGCTGCTGTGGGGGCGGGAGCAGCCTCAGTGTCAAGGGCCCGCCCACTGACCCAGCCGTACCTATTCGTCCACGGTGCCCCGTAGCAGCAGGTCCTGCGGCCAAATCTGTCTCCCTTCATGGGCCTCCCAGGGAAGGAGGAAGCCCTGCTGTGCAGACACCTCTGTGGCCCCCCAGGAGTGTGAGTGGCCTGGGGAGGGGGCCGTGGCACTGAGGCCGAAAGTGCCTGCCAGACGGCACGGTCTGGGTGCGGGTGTTCCCTGTGAGCCCGAGTCCGCTTCAGGAGGGGAGCCTGCAGGTGCCGGCTGGTGAGGGGATGACGCGCTGTGGGTGGGAGGAGGCAGCGCCCATCTCAGCAGCACCAGGACTGCCTGGGACTCCCTGGCAACCCAGCACCGGGGAAGCCGTCAGCTGCTGTGACAATAAAACCTGCCCCGTGTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007541-PIGQ:NM_004204:10
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=NA C2=0.214
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGTTCCGTGTCCTCCG
R:
AAGGTGTGATAGCAGGGCCT
Band lengths:
358-931
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)