MmuINT0119573 @ mm10
Intron Retention
Gene
ENSMUSG00000025728 | Pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:MGI Symbol;Acc:MGI:1333114]
Coordinates
chr17:25926421-25928852:-
Coord C1 exon
chr17:25928791-25928852
Coord A exon
chr17:25927757-25928790
Coord C2 exon
chr17:25926421-25927756
Length
1034 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TATCTCCCCTGCCCTTGCAGATA
3' ss Score
12.25
Exon sequences
Seq C1 exon
CTGGTGTGAAGTTCAGAGTTCTGGAAAAGGAGGCAGGCAGACCCCTCCGCCTCCTGATGCAG
Seq A exon
GTAAGAACTCTCTATGCTTCACTGCTACTCGGACCCGGGATCCCCACCTTCCATCAGACTCCCCAGTGTCCTGGGACAGCTGGTGTGATACTGTGGTGTTAGAGCAGCCAGAGGTCACATAGAGGTAGAAGGACCCAGTGGAGCTAAGGGATAGGTTCCCTGGCATCTGAGCACTATAACTCACTGTCTGGAGCCTCCCCAGCAGAGTTATGGCTACTTATTGTGATCTACATAGTTGATATCTAGTCCAGCCTGTGGGTGGAGTGCCCATACTTGGCTAGAGACATCATGAAGCTGCCCTGAGTCCCATAGTGCTCAAGATTGTGATAAAACAGAAATGACTTTACAAAGGCCTCATGACAAGTAGTCATTTCCTGTTGGTCTTGAACCCTTGACTCTTTCAGTCACAGATTCCAGTCCCCGTGAAGGGAGCAGAACATGTTTTGGGGTGACTTGCCAGGTATTGAGTTGTACCTTGGTCCAAGTCCAAGACTCTTAGATGCAGAAGCATCTGGCATGATCTCCTCCTCCTCTTCCTCCTCCTCCTCTTCCTCCTCCTCCTCTTCCTCTTCTTCTTCCTCCTCCTCCTCCTCTTCTTCCTCCTCCTCCCCCTCTTCCTCCTCTTCCTCCTCTTCCTCCTCTTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCCTCCTCCCAGAAGCCTAGAAACAGAATAGATTCTAGGATAGGGCAGACACTGAACTCCCCTGCCATCATTCCCTCCTTAGGGGACCAAAGTGCTATATGGTTGCTTCTCTAAGGATAGATAGCATGGCTATTCCATAGGCAAACATTTGTCTGGGTTTGCCCTACATTTGTCTTGCTAAAGATTCTCTAGAGAGCCAGTCAGGCCCAGGGTGCCAGCCCTCAAGAGCTTCTTCTGTAGACACAGCTGAAGCACCCAGGACCACTACCCTACTGATATCTCCCCTGCCCTTGCAG
Seq C2 exon
ATAAACCCCCTGTCCTATAACCATGTGATGCACATCTACCGTCTGCCTCGCTGTGGCTGCCATCCCAAGCACTCCTGGGGTACCCTGTGCCGAAAGCTGGTCTTCGGAGAGCTCATCTACCCCTGGAGGCAGAGAGAGGACAAACAGGACTGAGGAGCTGGACACAGCCTACCCATAGCTACTGCACAACCATCACGCCTCCTCTCTGCCAGGACAGCACTGACCACGGGGTCATCTCAGGTCCCACAAGGGCCAACCAAACACTCTGTGTGCTGAATGTAGGCAGGCCTTACCCTTGAGTTACTACTTTGCTCTCGGACCCTGCCAGCTTCAGTCCTGCACTCTATCTAGCACAGTGGTTCTCAACCGTCCCAAAGCTGACCCTTTAATACAGTTCCTCATGTTGTGGTGACCCCAACCATAAAATTATATTCATTACTACTTCATTACTGTTAATTTTGCTACTGCTATGAATCATGATATAATATAAATATCTGTGTTTTCTGACAGTCATAGGTGAACCCTGTGAAAGTGTCATATGACACCCACCCCAAAGGGTTGAGAACCACTGCTCTAGTATCACCTATGTAGGGACCCACATGGTTTTTGTAGTCATTACAGTGAGCCTGATTCCTAGGAGTTCCCGGACCCCGTGGGATATGCTGGCAGGTGCTCTTGGCTGCTTTATTGGGTGGGAGCACTCCTGGGCACCTGGTGTACTTCATAAGCCTCCGCAGAACATTTCCATTGGGAAACAGGCAGCTGCTGATCCCTTAGCCCCTCGAACTAATCCCTCACCCTGTACTTCATTGGGCTTACTTGCTACTCTGGAGATTGCTTTGTGAAGTTGCTGTTAATAGGCCTTTGGGTACCCTTTGCTTGAAGTTATATCAACTGAGGTGATTGGATACCTGCCAACCTGGCTAGTGCTCCATGTATGAATAGGCCCTTTGGCAAAATATTCTATGTTCTCTTATAGACTCCTTATGGGACCAGATAGCTTCCTTCTGGACAGGCACTTCATGGCTCATTGTGTGAATGATCTTGGGGTGGTGAAATGGCCAGGGTTGGTTCCCTAACACTTAGTGGGACCCCATGTGAGCTAGTCCCTAGGGGGCAGGAAACCTCACTGCCTGAATTGTCTACTGTGGGCAGGAGGGGACAGCCGGCCCAGCCTGTCTTTCAGGGGCACTTGGGACTATTGACATTGGTCTGTCTGTGCCTGCTTCCTCTTGCTATAGGTCACAGCCACTCTTAAGCAGCCAGTGGAGGGTTTTGGTGAAGATGAATCCTGATCCTGTGATGACAATAAAAATCTCATGAATCTGGAGTACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025728:ENSMUST00000026823:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.084 A=NA C2=0.013
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTGGAAAAGGAGGCAGGC
R:
GTAACTCAAGGGTAAGGCCTGC
Band lengths:
349-1383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types