GgaINT0015107 @ galGal4
Intron Retention
Gene
ENSGALG00000001985 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:HGNC Symbol;Acc:HGNC:14135]
Coordinates
chr14:13521668-13526446:+
Coord C1 exon
chr14:13521668-13521729
Coord A exon
chr14:13521730-13525832
Coord C2 exon
chr14:13525833-13526446
Length
4103 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTCTCTCTTTCTTCTCCCAGATC
3' ss Score
11.36
Exon sequences
Seq C1 exon
CTGGTGTGAAGTTCAGAGTCCTCGAGCAGCAGGATGGAAAACCTCTTCGACTCCTTATGCAG
Seq A exon
GTGAGCTGCGTGTGCCCTTGGTCACACTTGTGCTGTAAGCACCCCTCCAGCTGACCCCGGGGTCCTTTCACTTCTGAACTGGTCCCACAGCTTAGTGCCCTTTCTGTAAAGACCCCACTAAACTGCCTGCTGCTTTCTCATCTTCTGAGTGCCCTGGCTGGCTCCTCTGTTTGGAGAAAAAGCAGCATCTTGTGTGATGTGAAATGAGATGGGAGAAACGTGAGAAACACGTCAGTATCGCCGCGCTTCACGGCTGCGTGCAGCTGCACCTTAATAACTGCAGGACAGAAGGAGACAGCTGACCCATCTGGAATGAAGGATAGTCAGGGGCTAGTGAAAGGTTTTCACCTCCAGATGTGTTGGAAAGCCATAGCTGTTCCATGAGGCAGTCGGGACAGGTGTGTGGGTGAGACGAGAGAGGGAAGGACCTCCCGTAGCTCTCCTGGGTTGCCCTGTCAGGGCGCACAGCACAAGGCTGCCTGTGCTTTTGTAAGACTGCATTTCCACGCTGTCACCGGAGATAAGAAATCAGTTTTCTTCTGCAAGGAACGGGTGTGATGGTAGCAGCGAGGCTCTCGTTGCACTTGCAGGAGTGACTGTGAAACTCTCCTCTCCCAACTCTGTCGCTGTTCTTTGCATGTTGGGAAGAAAGTCTGTGAGTCAGTAGATGGAATTAAAGAAACCGTTTGCACGCTGGGGGAACGTGTGGGCAGGAATTAACCACGGCTTCCCAGATCGGCTGCTTTTTCCATCACGGGTCCAACCCCAGCCCCGTTTTGGCATAGGTCAGCTCAGCACCGAGCTGGCACAGCATCCTGCAGCGCTTCAGAAGGGGATCCCTCCTGCAGGTGTCTGCTGGGGCAAAAGGAGTGTTTGTATGGCACGCTGCTCCCACCCCCTGAGTTTCAGTAGGGTGGCGGTGGGAGAACCAAAGTCTGTCATTCTCCTTCCCCAGAAAACTCCATAAAAAGGAAACTGTGGCCACGAGCGGTGAAGCAGAGGAGCAGCTGAGCAGTTTGGCAGCAGTGTGTTTGTGAGGCGAGGTGGATGGCTGCTGCACAGGGAAAATAGCAGGACTGGGATGGAGAGCAGAGGCAGTGAGTCATGCCAATGTGCTGAATTTTCCTTGGACCGCTGCAGCGAGATCCATTTGCTATCTAGAATATAGCATAAGTCATCGTATCAGAAAGTGGAAGAGCTTTAGTGGATGTCACTTTTGGCCTTCTGCTCAAATCATAATGAGCACAGGGTTGGTATAAGGCACTTTTTTTTACTCCCTTTGTGCTGTTGGGAATGAAAAATGGGCTTCTGTCAGAAATTGTGCTGAATATGCCTCTTCCTGATAGGTCTTTTGAGAGGAAAACCTAAAAAGCCTATTTTTAAGTGACATACTGAGATTCTTATCCGTGCTACACAGTGATGCTCCCTTCTAGCAGTGTCACAGTGGCTGTGTCCCCTCCCTGTATGGTGGCCCTCTGACACCATGCGTGATCAAAGTACGGCTACGTGCATGCAACCATGCCTAAAATAACTGAAGCTGCGGGAGACTGTTACAACCCAAGCCACCCTTTGAGGCACTGGTAATGGATGAGAAATCAATAAGGCCGGGTTTGAGCATTCATGTTCAGCTCCTGGTTCAGCCAAGCAGTTATATTTGTATTTAAGGAATGTGATGTCCGGGCACAGGCACAGGAGGGTGGGGGTGATGCTTGCATTCCAAATGCTACTTGATTTTCTCCAGGAAGGCTGACATAGCTCAGTATTTTCATTAGTGTTTAAAAGCATTCATTTCAGTCCACGAGAAGTATTTCTGGCAGCGTGGCTCAGCTCAGTGAGAAGACACGATGTGTTTAATTCATCTGTGTACCTTCTGCCAGGAACGTCATCCCTCAGAGCAATTACTTGGAGAAGGGTTAAGCAGAAAGGGGAAAGGAAAAGGGAACAGCTCCGTTATGAAACAAAGGATGCTTATGATAGCAGGGTGTAGTATAACTTTGAAGGACAGAAACTGCAAAAAAGGAACTCATACTGCAGCTTCCCTAATAAACTGTTGCCTTTCTTTTGCTTGTTTGTTTCCATTTATAATAGGAGATACAACCTATATTGCCCTGGGATTAAAATGATCTCCTGCTACTTCTCAGCAGACAAATGTTACCGCTCGGTATCATCTCTCTGCCCAGGGAAACACTGTGTGCATCCTTCCAGCCCACATAGCTAATAGCCAGAGGCATCCTGTCCTCCTCCAGTGTGCGCTGCATAGAGCTGAGGAAGCAGGCAGTAATCATTGCTCAAGTTTTACTGTGCTGGGAGTTTTTATTTATTTATTTTGCATGCACATTTTGTTTTCTAAGTGGGGAGAGAGGGATGGTTTCTTTCGTCTCCCTTCTTTCTCTCCTTCCTTCTTTCTCATCTGTCGTTCCTAACTGCCCACAGCCACGATGCGATTAGGTTGGTTATAATGCCCAATAAATGCTGTGGTCCATCCCCGGCCATAAGGCTGTGTTTGAAATACGAGCTGCAGTAGTTTGGGTTGCCCGTGTGTGAGCTCAGCTCTTGGGTTTGGGGTACAAACATTCATTGGGGTGGAATTCAGCTTCCTGTGGATCTGTTTGAATGGCTGTCTCACAGCTGGACCCTGAGCTGGGTCTTTTCATTGCCTTGCCCTGGCCGCCTTCTGAACTTCACAAGGGTGCTTCTGAGCACGAGCATTTTCCTCCTTCTGCACTCTGAAACTCGTTTGGTAAGGGTCTCTGAGACTAATTCTAAAGAACTCTTTGCTTAATCGCTGTTTCTTGAAGCTCCATCCTTGCAGGCACCCATCGCTCGTCCTTCCTCTCTCCATGGGCACAGGAGAGCTGAAGCAGGAGAGCAGAAAACTGGTCACTCAGGAGAGCATGGGCACAGGAGAGCAGAAAACTGGTCACTCATCAGTGGGCAAGAGAAAAATTCAGCTTCTGAAAAAGCAGTGTCTCTGTGCGTGTTTTTATTGCCTCTGTCTTTTCTGTGACTGAGTTTTCCACCATGCATTGTACCCTCTTTCCTCGATCACACAGCCGCTTGCTTGGCTCCAGCATAACCGGACCCTTTCACTAGAGGAGGATTTCCTTCCATCTCTCCCCTCTGTCCAGGCTTCCTGAGGCTCTGTAAGTCTCCTTGCCTTGGCACCTCTCACAGTCTGTTTCCTGACACCACTGTTACTGTGTAATCATCTTCACTTTTAAGACAGTCTATTGCTGTGCGTCCTTCCCATGCACGTGAACTTGTGCAGACTGACTCCTCTGCACTTCAGCTATCTCTCTGTCCCGAAAAATGCTTCACTGGAATGAGAGTTTCCAAGATCTGATGTTGTCCCTTCTCCAGCTACAACATCTGTCTGACTGTCCCCATCATCAGAAAGACCAACACAGAAACTCTGTGACCTCAGTCAGAGGCTGTGAGCTTGCATAGGCAGGGAATCCTTCTTGGGACAGGGATTGAACTTGCATTGTAAACTATGAACTCAGCCAAGGAGATTTATTTTAAAGTAATAGTGAGCAGTCCTGCCTGGTATTGCTTTGTATCCATCCTGTTCTGCTCGGACACGATTCCATCAAGTGCTGAATGAGGTCCAGCTTGAAGTGTAGCTGAGGACGGGGGGCTGGCACCTTAAAGCAGTTGGCCATTAAGAGAGACATCCTAACTGATACATAATGGAGGCGTTGCTACAGCTTTAGTGCATCCCCAGAGGAGTACAGGTGTGTGCAGTGGAGCCCCCATCTCTCCAGCCACTATGAGCTGCTAATGCGACAAGGTGACAGTCCTGCCTCTCACTGTAAGGTGAACAGCACTCTCAAATCCTTCTGACATTTACATCTACTTCTCTGCTTGAAAAGTGGTCTAATAATACTGTTTGCCAGGCTTGATTTGCTAATGTTTCAGGGCATTGTAGAAGACTAAATAGCTTTAACTAAATAGCTTTAACTCACAGGGAGGGAGTTTGGTGTCTTCTGTACCTGTGTGACGCTCTAACAGAGGCTGTGCTACACAGAAGTTGCAGTTACTGCCTCCCTGCCCCTCCTGCTTCAGGGCATTTTCATTGCTGCTGTCTCTCTTTCTTCTCCCAG
Seq C2 exon
ATCAACCCTCTGTCCTATGGCAGTGTGGTGCAGACATACAGGCTGCCGACCTACAGCTGTTACCCTAAGGATTCCTGGACGTCCCTGTGCAAGAAGCTGTTCCTTGGAGAGCTGATCTACCCTTGGAAACACAAAGGAGAGAAACAGGACTGAAAAAAAAAAAAAAAAGCAGAAGAGCCAGGAGGGAAAGACTTGGTTAGAAAAGCTTATTGACTCCTAATGCTTTTGGACCAAAGGTATCTCAGAGCCAGCAGCTGCTGGATCCTTTTAATGACAGTTTGGTAATGTGGGAGGGGCTGAATTTTTAAAGGCAAATGTTTTTAAATATTATTTGTCAACTTCCCATTTCCCCTACAGTGTGTTTGAGCTGGTTTGGTTTCCAGGCTGTTTCTTGTTCATGCAGCGTTCGTCCTACCCTGCCTGCTGTCTGCCTGCTGGCACCAGGGGCTAATGATTCTTCTTGGAGCAAAAGGTTAAACCTTTTTACCACCAGTGCCTCATGGAACCAGCATTTAGTGTAACCAAGGAAGTACCTCCTGAGTACTTGATGCTGTATACACCTTTTTGTGTGAGTTCACAGAGCCATATTAAAACCAGCCCTTTGGGTGGTTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001985:ENSGALT00000003090:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]