HsaINT0124825 @ hg19
Intron Retention
Gene
ENSG00000007541 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:HGNC Symbol;Acc:14135]
Coordinates
chr16:630858-634109:+
Coord C1 exon
chr16:630858-630972
Coord A exon
chr16:630973-632882
Coord C2 exon
chr16:632883-634109
Length
1910 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
3' ss Seq
CGCTGCCCTTGTCCTTCCAGATA
3' ss Score
11.91
Exon sequences
Seq C1 exon
CTCCGGCTCCTGGTGGTCGCCGTGCAGGGCCTGATCCATCTGCTCGTGGACCTCATCAACTCCCTGCCGCTGTACTCACTGGGTCTTCGGCTCTGCCGGCCCTACAGGCTGGCGG
Seq A exon
GTAAGTGCTGCGTATTGGGCAGCTGGCCCTGGGTAGGTGGAGGGGAACCACACCTGTGGGCCCTGCAGAAGCAAGGACAGCATGGGCCACTGTGCCTCCAGCCTGGAAGCCGTGGTATGCATGCGCAAGCGGGCAGGGAGGACAGGGCCTCCTAGTCCCAGAGGTCTGCAGGACCAGCTGCCTCCAGGGAGGTGGAGAGAGACTCAGAGACTCACCTGCCGCGCAGGTTCAGAACCCTGGAGACCTGAGGCCACAGGCCTTTGTTCTTCTGCCTTGGGATTTTCTGGGCTTGGGAGTCTGAACTGCAGGCCAGGGGCCAAGCGCGGCAAAGTCAGAGGCACTAGGAGCCAGCAGGGCGGCCACCATCCAGTAAGTGCCCCGTCCGCTGTGCCGGAAAACCCCGTCCACTCAACAGCACAGCCTGCGCCCGTCCCTCACTGGGGCTCTTCCCTGCTTGCCGGACACCTGGCTTCTTTCAGTGGAGTCTGCAGGAGGCTTTTTTTTTTTTGAGACGGAGTCTCACTTTGTCGCCCAGGCTGGAGTGCAATGGCGCAATCTCGGCTCACTGTAATCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTAGGATTACAGGTGTGTGCCACCACGCCCAGCTAATTTTTTGTATTTTAGTAGAGATGGGGGTTTCACCATTTTGGCCACGCTGGTCTCGAACTCCTGACCTCGTGATCCTCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCACGAGCCACCGTGCCCGGCTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTTTTTGCCCAGGCTGGAGTGCAATGGTGTGATCTCAGCTCACTGCAACCTTCGCCTCCCTGGTTGAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGATTACAGGCACACGCCATCACACCCGGCTAATTTTTGTATTTTTAGTACGTATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCATGATCCGCCCACCTCCCAAAATGCTGGGATTACAGGCGTGAGCCACCGTGCCTGGCTGCAGGAGGCTTTGATGCCGGCCTGGCAGCCAGCTCCAGGAGTTGGGCGACGGAGGGGGCGGGGAGAGCTTCGTGGGTGGCCACGGCCAGCAGCACCCGGGTGCCCCTCAGAGAGGAAGGTACCTGCAGCCTCTGCTCATGTGTGGGGCCAGCCCCCACGCGTCCCCTCGTCAGCCGCTTGCTATCCTTGCAGCTGGCGTGAAGTTCCGTGTCCTCCGGCACGAGGCCGGCAGGCCCCTCCGCCTCCTGATGCAGGTGAGGCCCCTTGTGGCCAGGACGCCCCTACGCTGCTGCCCCTGTTCTGGGACGGTGGGGTCAGCTGGGTGTAGTGTCTGGGTGGCACCACGCCAGCCTGCGATGAGGTACAGGGAGGGCCCAGTGGAGCTGAGGGGGAAGGCCCACGCGGGACCCCCTCCCCCTTACCCCCAGGGCCTGAGGACACTGGTGTGGTCCTGTGGATGGGGCCCATTCTGCCCTGTGTCGGAGGCGCCCTTGGCTGGCTGGGGCTGCCCTGGGCCCCACAGGGCTCAAGTTCTGGGTGGAACAGAACCGACTGAGTGAGTCCTGGGGTGGGGTGTGCGTCCCTGTGGCACGGCCCCTCAGAGTTGGGCAGCCCCGAGGGGAGATGCAGCTTCTGCCTCCCCCCAGCGCTCCCTTCTGGCTGCAGGCTCACTTGCCTCCTTGGGAACTGGGACTGGCTTCTCCCACAGGCAAGGGAATGTCTGAGACAGCACTGGCCCTGCCTCACAACTGCCCGCCCCCACCCTCTCTCTGCAGACGGGGTTGGAGCTCAGACCACCCCACTGACCGCTGCCCTTGTCCTTCCAG
Seq C2 exon
ATAAACCCACTGCCCTACAGCCGCGTGGTGCACACCTACCGCCTCCCCAGCTGTGGCTGCCACCCCAAGCACTCCTGGGGCGCCCTGTGCCGCAAGCTGTTCCTTGGGGAGCTCATCTACCCCTGGAGGCAGAGAGGGGACAAGCAGGACTGAGGGAACTGCTGGCTCGCCTGGCACCACCACACGGCCACAGCCAGCCATCTGCTCTGCCAGGGTGGCACCAGCTCAGCTGGCGCATGTCCTGTGCTTTGTGGACGCTGCTGTGTGCTCCTGAACACGGCAGGCCCTGCTATCACACCTTGGGCTTGGAGGTCATTGGGAGTGAGCAGATGTGGGGGTGGCCAGCCAGGCTGGCCGCACTCCATCACTGGCACTGCCTGCCTTGGGACCCGCTTCCCACCTGCTGCGGTCACCATGGTGGCGAGCACAGCAACCCCAGGTGTCCAGAGCACTGCCCCATGCCCACCCTGTGTACCCAGGTCCAGAGGGTCCGTCCACCACAGCAGCCCCAGGTGGAGGGCTGGTCTCCCTGGGGGCTCCCCAGTGGCTCTGCCCTGGCTGTGGGGGTGGAGGGACCTTGCCAGGATGAACCCCCCAGTCCCAGGCACCCTCTAGCTCCCTCAGCCGAACAGCACCCTGCATCTGGGGGATTGAAGCAGTCGCTGACCCCCGTCCCCAGCGGGCCCGGGCCCTCACTCCCTGAACCACACGGGGTTTATTTGCGGATGTTCCCTGGAGAGGTCGCTTTGTGAAGAAACCATCAGCAGGCTGTGAGCATCGCCAGGCTGCTGTGGGGGCGGGAGCAGCCTCAGTGTCAAGGGCCCGCCCACTGACCCAGCCGTACCTATTCGTCCACGGTGCCCCGTAGCAGCAGGTCCTGCGGCCAAATCTGTCTCCCTTCATGGGCCTCCCAGGGAAGGAGGAAGCCCTGCTGTGCAGACACCTCTGTGGCCCCCCAGGAGTGTGAGTGGCCTGGGGAGGGGGCCGTGGCACTGAGGCCGAAAGTGCCTGCCAGACGGCACGGTCTGGGTGCGGGTGTTCCCTGTGAGCCCGAGTCCGCTTCAGGAGGGGAGCCTGCAGGTGCCGGCTGGTGAGGGGATGACGCGCTGTGGGTGGGAGGAGGCAGCGCCCATCTCAGCAGCACCAGGACTGCCTGGGACTCCCTGGCAACCCAGCACCGGGGAAGCCGTCAGCTGCTGTGACAATAAAACCTGCCCCGTGTCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007541-PIGQ:NM_148920:9
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.214
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=PD(35.4=43.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCACTGGGTCTTCGGCTC
R:
CCAAGCCCAAGGTGTGATAGC
Band lengths:
352-2262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)