HsaINT0124825 @ hg38
Intron Retention
Gene
ENSG00000007541 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis class Q [Source:HGNC Symbol;Acc:HGNC:14135]
Coordinates
chr16:582248-584136:+
Coord C1 exon
chr16:582248-582309
Coord A exon
chr16:582310-582882
Coord C2 exon
chr16:582883-584136
Length
573 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CGCTGCCCTTGTCCTTCCAGATA
3' ss Score
11.91
Exon sequences
Seq C1 exon
CTGGCGTGAAGTTCCGTGTCCTCCGGCACGAGGCCGGCAGGCCCCTCCGCCTCCTGATGCAG
Seq A exon
GTGAGGCCCCTTGTGGCCAGGACGCCCCTACGCTGCTGCCCCTGTTCTGGGACGGTGGGGTCAGCTGGGTGTAGTGTCTGGGTGGCACCACGCCAGCCTGCGATGAGGTACAGGGAGGGCCCAGTGGAGCTGAGGGGGAAGGCCCACGCGGGACCCCCTCCCCCTTACCCCCAGGGCCTGAGGACACTGGTGTGGTCCTGTGGATGGGGCCCATTCTGCCCTGTGTCGGAGGCGCCCTTGGCTGGCTGGGGCTGCCCTGGGCCCCACAGGGCTCAAGTTCTGGGTGGAACAGAACCGACTGAGTGAGTCCTGGGGTGGGGTGTGCGTCCCTGTGGCACGGCCCCTCAGAGTTGGGCAGCCCCGAGGGGAGATGCAGCTTCTGCCTCCCCCCAGCGCTCCCTTCTGGCTGCAGGCTCACTTGCCTCCTTGGGAACTGGGACTGGCTTCTCCCACAGGCAAGGGAATGTCTGAGACAGCACTGGCCCTGCCTCACAACTGCCCGCCCCCACCCTCTCTCTGCAGACGGGGTTGGAGCTCAGACCACCCCACTGACCGCTGCCCTTGTCCTTCCAG
Seq C2 exon
ATAAACCCACTGCCCTACAGCCGCGTGGTGCACACCTACCGCCTCCCCAGCTGTGGCTGCCACCCCAAGCACTCCTGGGGCGCCCTGTGCCGCAAGCTGTTCCTTGGGGAGCTCATCTACCCCTGGAGGCAGAGAGGGGACAAGCAGGACTGAGGGAACTGCTGGCTCGCCTGGCACCACCACACGGCCACAGCCAGCCATCTGCTCTGCCAGGGTGGCACCAGCTCAGCTGGCGCATGTCCTGTGCTTTGTGGACGCTGCTGTGTGCTCCTGAACACGGCAGGCCCTGCTATCACACCTTGGGCTTGGAGGTCATTGGGAGTGAGCAGATGTGGGGGTGGCCAGCCAGGCTGGCCGCACTCCATCACTGGCACTGCCTGCCTTGGGACCCGCTTCCCACCTGCTGCGGTCACCATGGTGGCGAGCACAGCAACCCCAGGTGTCCAGAGCACTGCCCCATGCCCACCCTGTGTACCCAGGTCCAGAGGGTCCGTCCACCACAGCAGCCCCAGGTGGAGGGCTGGTCTCCCTGGGGGCTCCCCAGTGGCTCTGCCCTGGCTGTGGGGGTGGAGGGACCTTGCCAGGATGAACCCCCCAGTCCCAGGCACCCTCTAGCTCCCTCAGCCGAACAGCACCCTGCATCTGGGGGATTGAAGCAGTCGCTGACCCCCGTCCCCAGCGGGCCCGGGCCCTCACTCCCTGAACCACACGGGGTTTATTTGCGGATGTTCCCTGGAGAGGTCGCTTTGTGAAGAAACCATCAGCAGGCTGTGAGCATCGCCAGGCTGCTGTGGGGGCGGGAGCAGCCTCAGTGTCAAGGGCCCGCCCACTGACCCAGCCGTACCTATTCGTCCACGGTGCCCCGTAGCAGCAGGTCCTGCGGCCAAATCTGTCTCCCTTCATGGGCCTCCCAGGGAAGGAGGAAGCCCTGCTGTGCAGACACCTCTGTGGCCCCCCAGGAGTGTGAGTGGCCTGGGGAGGGGGCCGTGGCACTGAGGCCGAAAGTGCCTGCCAGACGGCACGGTCTGGGTGCGGGTGTTCCCTGTGAGCCCGAGTCCGCTTCAGGAGGGGAGCCTGCAGGTGCCGGCTGGTGAGGGGATGACGCGCTGTGGGTGGGAGGAGGCAGCGCCCATCTCAGCAGCACCAGGACTGCCTGGGACTCCCTGGCAACCCAGCACCGGGGAAGCCGTCAGCTGCTGTGACAATAAAACCTGCCCCGTGTCTGGAGCGCAGGCTCGGTCCCGGGTCCATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007541:ENST00000321878:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.149
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGTTCCGTGTCCTCCG
R:
AAGGTGTGATAGCAGGGCCT
Band lengths:
358-931
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development