BtaINT0111566 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016594 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:HGNC Symbol;Acc:HGNC:14135]
Coordinates
chr25:509884-511059:+
Coord C1 exon
chr25:509884-509945
Coord A exon
chr25:509946-510642
Coord C2 exon
chr25:510643-511059
Length
697 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CGCTGCCCTTGTGCTTCCAGATA
3' ss Score
10.3
Exon sequences
Seq C1 exon
CCGGCGTGAAGTTCCGGGTCCTGGAGCACGAGGCTGGCCGGCCCCTGCGCCTCCTGATGCAG
Seq A exon
GTAAGGCCTCCCTGCGGCCCTCGCGTTGCTGCCCGTCGACAGGCGCCCTGCTCACCGTGAGGCCCCCTGTTCTGGGGCATGTTCTCTGCCCCCCTGGTGGGGGGCCTCAGGGGCCCCGGGGAGACTCCCCTGCTCCCAAGGCCTTTGGGCACCGTGACGCCCCCTCTGCCTGGGCCTTCCCCCAGCGTTGAATCCCTGTGGTGTGCCAGACACCCTGGGGTACCCAGGCTCTACCTGTTGGGCCCTGCGTCCCTGTGTCCTGCCCTGGGCCGGGGCTCTGTCTCCAGGCAGGATATCAGAAACGTGGCACAGGCCAGCCCTGTTGGGTTGGGGCCTGTCCCCCTGGGGCTGTGGGCCAGTTGCCTGAGGCGCAAAAGCAGCCAGGCTGGCCTGAGAGGAGAGTTCAGAGGCTAAGGAGCCTGTGTGGTTTTCTGGGGAGGCCTGGAGCGAGGTGGTTTTCAAGGAGTGAGTCCTGGAGCGGGGTCTCGGCCCCCGCAGCCGGGCCAGAGCAGAGCACTGCTGACTGAGGCCCGGGCCTGCCTGACCTGTGTGCCCCAGCAAGAGTGTGTCTGGCTCGGAGCCAGCCCTGCCCTGCAGTTGTCCAGCCCAGGGACCCCCAGGACAGCCTGCGAGGCCTGGAGAGGGAGTCCGGGGGTTGGGGCCATGTCCTGGCTGATCGCTGCCCTTGTGCTTCCAG
Seq C2 exon
ATAAACCCTCTGCCCTTCAGCCACGTGGTGCGCACCTACCGCCTCCCCAGCTGTGGCTGCCACCCCAAGCACTCCTGGGGTTCCCTGTGCCGCAAGCTGTTCTTCGGGGAGCTCATCTACCCCTGGAGGCAGAGAGGGGACAAGCAGGACTGAGGGCCCGGCCCCCGGCCCGCCTTGCACCGCCATCTGCCAGGTGTCAGGGCGGCACACACCTCTTGCTACCCCTGGTTGTCGGGGCCTCTGCAGGCCCCACCCGTCGCATCTCCACCCGACTCCGGTCCTGGGGGTGGTGAGGAGGGGGACGCGCGCAGTCAGCCAAGCCAGCACCCAGCTTCAGCACCATCAGCTCTGCCTCGGGGCCCCCTGCTGACCTGTTGTGACGGCACGGTTCACCTTGTCCCACCGGCCCCTGGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016594:ENSBTAT00000022073:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.512 A=NA C2=0.327
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTTCCGGGTCCTGGAG
R:
CTCCTCACCACCCCCAGG
Band lengths:
353-1050
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]