GgaINT0015107 @ galGal3
Intron Retention
Gene
ENSGALG00000001985 | PIGQ
Description
NA
Coordinates
chr14:14285651-14290417:+
Coord C1 exon
chr14:14285651-14285712
Coord A exon
chr14:14285713-14289815
Coord C2 exon
chr14:14289816-14290417
Length
4103 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTCTCTCTTTCTTCTCCCAGATC
3' ss Score
11.36
Exon sequences
Seq C1 exon
CTGGTGTGAAGTTCAGAGTCCTCGAGCAGCAGGATGGAAAACCTCTTCGACTCCTTATGCAG
Seq A exon
GTGAGCTGCGTGTGCCCTTGGTCACACTTGTGCTGTAAGCACCCCTCCAGCTGACCCCGGGGTCCTTTCACTTCTGAACTGGTCCCACAGCTTAGTGCCCTTTCTGTAAAGACCCCACTAAACTGCCTGCTGCTTTCTCATCTTCTGAGTGCCCTGGCTGGCTCCTCTGTTTGGAGAAAAAGCAGCATCTTGTGTGATGTGAAATGAGATGGGAGAAACGTGAGAAACACGTCAGTATCGCCGCGCTTCACGGCTGCGTGCAGCTGCACCTTAATAACTGCAGGACAGAAGGAGACAGCTGACCCATCTGGAATGAAGGATAGTCAGGGGCTAGTGAAAGGTTTTCACCTCCAGATGTGTTGGAAAGCCATAGCTGTTCCATGAGGCAGTCGGGACAGGTGTGTGGGTGAGACGAGAGAGGGAAGGACCTCCCGTAGCTCTCCTGGGTTGCCCTGTCAGGGCGCACAGCACAAGGCTGCCTGTGCTTTTGTAAGACTGCATTTCCACGCTGTCACCGGAGATAAGAAATCAGTTTTCTTCTGCAAGGAACGGGTGTGATGGTAGCAGCGAGGCTCTCGTTGCACTTGCAGGAGTGACTGTGAAACTCTCCTCTCCCAACTCTGTCGCTGTTCTTTGCATGTTGGGAAGAAAGTCTGTGAGTCAGTAGATGGAATTAAAGAAACCGTTTGCACGCTGGGGGAACGTGTGGGCAGGAATTAACCACGGCTTCCCAGATCGGCTGCTTTTTCCATCACGGGTCCAACCCCAGCCCCGTTTTGGCATAGGTCAGCTCAGCACCGAGCTGGCACAGCATCCTGCAGCGCTTCAGAAGGGGATCCCTCCTGCAGGTGTCTGCTGGGGCAAAAGGAGTGTTTGTATGGCACGCTGCTCCCACCCCCTGAGTTTCAGTAGGGTGGCGGTGGGAGAACCAAAGTCTGTCATTCTCCTTCCCCAGAAAACTCCATAAAAAGGAAACTGTGGCCACGAGCGGTGAAGCAGAGGAGCAGCTGAGCAGTTTGGCAGCAGTGTGTTTGTGAGGCGAGGTGGATGGCTGCTGCACAGGGAAAATAGCAGGACTGGGATGGAGAGCAGAGGCAGTGAGTCATGCCAATGTGCTGAATTTTCCTTGGACCGCTGCAGCGAGATCCATTTGCTATCTAGAATATAGCATAAGTCATCGTATCAGAAAGTGGAAGAGCTTTAGTGGATGTCACTTTTGGCCTTCTGCTCAAATCATAATGAGCACAGGGTTGGTATAAGGCACTTTTTTTTACTCCCTTTGTGCTGTTGGGAATGAAAAATGGGCTTCTGTCAGAAATTGTGCTGAATATGCCTCTTCCTGATAGGTCTTTTGAGAGGAAAACCTAAAAAGCCTATTTTTAAGTGACATACTGAGATTCTTATCCGTGCTACACAGTGATGCTCCCTTCTAGCAGTGTCACAGTGGCTGTGTCCCCTCCCTGTATGGTGGCCCTCTGACACCATGCGTGATCAAAGTACGGCTACGTGCATGCAACCATGCCTAAAATAACTGAAGCTGCGGGAGACTGTTACAACCCAAGCCACCCTTTGAGGCACTGGTAATGGATGAGAAATCAATAAGGCCGGGTTTGAGCATTCATGTTCAGCTCCTGGTTCAGCCAAGCAGTTATATTTGTATTTAAGGAATGTGATGTCCGGGCACAGGCACAGGAGGGTGGGGGTGATGCTTGCATTCCAAATGCTACTTGATTTTCTCCAGGAAGGCTGACATAGCTCAGTATTTTCATTAGTGTTTAAAAGCATTCATTTCAGTCCACGAGAAGTATTTCTGGCAGCGTGGCTCAGCTCAGTGAGAAGACACGATGTGTTTAATTCATCTGTGTACCTTCTGCCAGGAACGTCATCCCTCAGAGCAATTACTTGGAGAAGGGTTAAGCAGAAAGGGGAAAGGAAAAGGGAACAGCTCCGTTATGAAACAAAGGATGCTTATGATAGCAGGGTGTAGTATAACTTTGAAGGACAGAAACTGCAAAAAAGGAACTCATACTGCAGCTTCCCTAATAAACTGTTGCCTTTCTTTTGCTTGTTTGTTTCCATTTATAATAGGAGATACAACCTATATTGCCCTGGGATTAAAATGATCTCCTGCTACTTCTCAGCAGACAAATGTTACCGCTCGGTATCATCTCTCTGCCCAGGGAAACACTGTGTGCATCCTTCCAGCCCACATAGCTAATAGCCAGAGGCATCCTGTCCTCCTCCAGTGTGCGCTGCATAGAGCTGAGGAAGCAGGCAGTAATCATTGCTCAAGTTTTACTGTGCTGGGAGTTTTTATTTATTTATTTTGCATGCACATTTTGTTTTCTAAGTGGGGAGAGAGGGATGGTTTCTTTCGTCTCCCTTCTTTCTCTCCTTCCTTCTTTCTCATCTGTCGTTCCTAACTGCCCACAGCCACGATGCGATTAGGTTGGTTATAATGCCCAATAAATGCTGTGGTCCATCCCCGGCCATAAGGCTGTGTTTGAAATACGAGCTGCAGTAGTTTGGGTTGCCCGTGTGTGAGCTCAGCTCTTGGGTTTGGGGTACAAACATTCATTGGGGTGGAATTCAGCTTCCTGTGGATCTGTTTGAATGGCTGTCTCACAGCTGGACCCTGAGCTGGGTCTTTTCATTGCCTTGCCCTGGCCGCCTTCTGAACTTCACAAGGGTGCTTCTGAGCACGAGCATTTTCCTCCTTCTGCACTCTGAAACTCGTTTGGTAAGGGTCTCTGAGACTAATTCTAAAGAACTCTTTGCTTAATCGCTGTTTCTTGAAGCTCCATCCTTGCAGGCACCCATCGCTCGTCCTTCCTCTCTCCATGGGCACAGGAGAGCTGAAGCAGGAGAGCAGAAAACTGGTCACTCAGGAGAGCATGGGCACAGGAGAGCAGAAAACTGGTCACTCATCAGTGGGCAAGAGAAAAATTCAGCTTCTGAAAAAGCAGTGTCTCTGTGCGTGTTTTTATTGCCTCTGTCTTTTCTGTGACTGAGTTTTCCACCATGCATTGTACCCTCTTTCCTCGATCACACAGCCGCTTGCTTGGCTCCAGCATAACCGGACCCTTTCACTAGAGGAGGATTTCCTTCCATCTCTCCCCTCTGTCCAGGCTTCCTGAGGCTCTGTAAGTCTCCTTGCCTTGGCACCTCTCACAGTCTGTTTCCTGACACCACTGTTACTGTGTAATCATCTTCACTTTTAAGACAGTCTATTGCTGTGCGTCCTTCCCATGCACGTGAACTTGTGCAGACTGACTCCTCTGCACTTCAGCTATCTCTCTGTCCCGAAAAATGCTTCACTGGAATGAGAGTTTCCAAGATCTGATGTTGTCCCTTCTCCAGCTACAACATCTGTCTGACTGTCCCCATCATCAGAAAGACCAACACAGAAACTCTGTGACCTCAGTCAGAGGCTGTGAGCTTGCATAGGCAGGGAATCCTTCTTGGGACAGGGATTGAACTTGCATTGTAAACTATGAACTCAGCCAAGGAGATTTATTTTAAAGTAATAGTGAGCAGTCCTGCCTGGTATTGCTTTGTATCCATCCTGTTCTGCTCGGACACGATTCCATCAAGTGCTGAATGAGGTCCAGCTTGAAGTGTAGCTGAGGACGGGGGGCTGGCACCTTAAAGCAGTTGGCCATTAAGAGAGACATCCTAACTGATACATAATGGAGGCGTTGCTACAGCTTTAGTGCATCCCCAGAGGAGTACAGGTGTGTGCAGTGGAGCCCCCATCTCTCCAGCCACTATGAGCTGCTAATGCGACAAGGTGACAGTCCTGCCTCTCACTGTAAGGTGAACAGCACTCTCAAATCCTTCTGACATTTACATCTACTTCTCTGCTTGAAAAGTGGTCTAATAATACTGTTTGCCAGGCTTGATTTGCTAATGTTTCAGGGCATTGTAGAAGACTAAATAGCTTTAACTAAATAGCTTTAACTCACAGGGAGGGAGTTTGGTGTCTTCTGTACCTGTGTGACGCTCTAACAGAGGCTGTGCTACACAGAAGTTGCAGTTACTGCCTCCCTGCCCCTCCTGCTTCAGGGCATTTTCATTGCTGCTGTCTCTCTTTCTTCTCCCAG
Seq C2 exon
ATCAACCCTCTGTCCTATGGCAGTGTGGTGCAGACATACAGGCTGCCGACCTACAGCTGTTACCCTAAGGATTCCTGGACGTCCCTGTGCAAGAAGCTGTTCCTTGGAGAGCTGATCTACCCTTGGAAACACAAAGGAGAGAAACAGGACTGAAAAAAAAAAAAAAAAGCAGAAGAGCCAGGAGGGAAAGACTTGGTTAGAAAAGCTTATTGACTCCTAATGCTTTTGGACCAAAGGTATCTCAGAGCCAGCAGCTGCTGGATCCTTTTAATGACAGTTTGGTAATGTGGGAGGGGCTGAATTTTTAAAGGCAAATGTTTTTAAATATTATTTGTCAACTTCCCATTTCCCCTACAGTGTGTTTGAGCTGGTTTGGTTTCCAGGCTGTTTCTTGTTCATGCAGCGTTCGTCCTACCCTGCCTGCTGTCTGCCTGCTGGCACCAGGGGCTAATGATTCTTCTTGGAGCAAAAGGTTAAACCTTTTTACCACCAGTGCCTCATGGAACCAGCATTTAGTGTAACCAAGGAAGTACCTCCTGAGTACTTGATGCTGTATACACCTTTTTGTGTGAGTTCACAGAGCCATATTAAAACCAGCCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001985:ENSGALT00000003090:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]