DreINT0114089 @ danRer10
Intron Retention
Gene
ENSDARG00000038097 | pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:ZFIN;Acc:ZDB-GENE-030131-9793]
Coordinates
chr3:26661675-26662917:-
Coord C1 exon
chr3:26662856-26662917
Coord A exon
chr3:26662611-26662855
Coord C2 exon
chr3:26661675-26662610
Length
245 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
ATAATTTTCTCCACCCTCAGATC
3' ss Score
9.36
Exon sequences
Seq C1 exon
AGGGTGTTAAATTCAAAGTGCTTTGTGAGGAGTCAGGATCTCCGCTTCACCTGATGATGGAG
Seq A exon
GTAGGTTTATTATTGGGAGAACAGTTTAAAATCCTGCGGTTGACTTATAATTGAGTTTCATTTGTGGTTTGGGTTTGACCTGTTGATTTTCTGGGATGGGTTATATAAGGCTTATTGTTTGGTTGAATTCATAATCCGTACAAACACTGGACATGCTTTGCTTAGCTATGAGGTTTGATAATGAATGATGTTCTAGATGAGCAAACATGAACGACAGAAAAAGAAATAATTTTCTCCACCCTCAG
Seq C2 exon
ATCAACCCATTGAAGTGCAGCTCTGTACTACAGCGCTACCGGACGCCCACCTATAGCTGTTACCCTAAGGATTCATGGGCCGCATTGTGCAAGAAACTATTTGTAGGAGAACTTATTTACCCCTGGAAGCAGAAGACTGACAAGACAGACTAACTTTGAGGTACCATGCCTGTTCAATTCTGGTTCTGGAGTTTAGCTCAAACTTATGCCAACACAGCTGCCTTTTTTGTTTGGGGTTGGAGCTAAACTCTTTCAGGAATGGACAACACTATACTAGACTAACATAACCAGACATGTGCACACTGGGGAAAACATGCTCTGTTCGTCAAACTTCACTCACTTCCAAAATAGTCTTAATAGTTTTTCTTTTATAAAAATACAGATTATGTTAAATGAAATAATTAGATAAACATTGAATCACTATTTCTGTGATTGAAACTGTGATTATTTTTGTATTTATTTTAAGTCTATTTCTACTTTTGTATAACATTTGAAGATGTGCCATGTACTACTTGTAAGTTTGATAGTTAATTCTGATCGCTGTATCACTACCAATTTATTAGATTTATTTGAACTGGAAGTAAAACTGTCAACCTTATTAGTTTTTAGCCTCTCCTGATAGGCTAGGTAGATGGAAAGTGACTTGAGTAAAGTTGTTTAAAGTACTATAAAGTTTAAAGTGGTACTATAAAATTGTATACATTTATATAAGTCTAATCTACCTGATCAATGTGAACTGACTGAGTTAAGTATAGTTACATTTTTTTTATTAAATTATTTAACCATGATCCTCTTGTATAATCATTGCCAAATTGTGTTTTTGTAGCAGTTAATAATGTTATGAGTTAATAAAATGTGTATAAATGCAGGTGGAATTAATTTTGTGCCATTTTTTTTTTTTATCTTTGAACCCTTTAATAAAGTTTATTTAATCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038097:ENSDART00000143710:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAGGAGTCAGGATCTCCG
R:
AAAGAGTTTAGCTCCAACCCCA
Band lengths:
292-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]