RnoINT0111132 @ rn6
Intron Retention
Gene
ENSRNOG00000020140 | Pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:RGD Symbol;Acc:1359535]
Coordinates
chr10:15289536-15291769:-
Coord C1 exon
chr10:15291708-15291769
Coord A exon
chr10:15290898-15291707
Coord C2 exon
chr10:15289536-15290897
Length
810 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TAACTGCCCTGCCCTTGCAGATA
3' ss Score
11.16
Exon sequences
Seq C1 exon
CTGGTGTGAAGTTCAGAGTTCTGGAAAAGGAGGCAGGCAGGCCCCTCCGCCTCCTGATGCAG
Seq A exon
GTAAGAACTTCTTTACGCTTCACTGCTACTCAGACCTGGGACCCCCTCCCACCATATTCCTCCAGTTCTCTGGGACAGCCGGTGTCAGCTGGTGGGACACTGTGGTGTTATATCAGCCAGAGGTCAGGTATAGGCAGGACGACCCAGTGGAGCTAAGGGATAGGTTCCCAGGCATCTGAGCACCATAACTCGCTATGTCTGGAGCCTCCTCAGCAGAGCTGTGGCTACCTAGTGTGGTCTACATAGCTGACATGTAGTCCAGCCTACGGGTGGATACCCCTTTCCTTGGCCAGAGACATCATGAAGCTGCCCTGGGTCCCATAGTGCTCAAGATTGTGATGAAACAGGAATGGCTTTACAAAGGCCTCATGACAAGTCGCCATTTCCTGTTGGACTTGAACCCTGGCTCTTCCAGTCCCAGGTTCCAGTCCCTGTGTGACTTTGCAGGTATTGAGTTGTACCTTGGGCCAAGTCCAAATCTCTCAGATGCTGAAACATCTGGCATGATCCTTCTCCTCCCAGAAGCCTAGAGACAGAGTAGATCCTAGGATAGGGCAGACACTGAGCTCCCTTTGTCACCCTCAGGGGACCAAAGTGCTGTATGAGCTGCTCCTCCAAGTGTAGATAGCATGGCTATTCTGTAGGCAAAGGTTTGTCAGAGCCCAGCTGGGCTTGCCTTACGGTTGTCTAGCTAAAGATTCTCTGGAGGGCCAGTCAGGCTCGGGATGCCAGCCCTCAGGAGCTTCTGTGCACACAGCTGAAGCACCTGTGACCACCCCCCCCCTACTGATAACTGCCCTGCCCTTGCAG
Seq C2 exon
ATAAACCCTCTGCCCTATAGCCATGTTGTGCACACCTACCGTCTGCCTAGCTGTGGCTGCCATCCCAAGCACTCCTGGGGTACTCTGTGCCGAAAGCTGTTCTTCGGAGAGCTCATCTACCCCTGGAGGCAGAGAGAGGACAAACAGGACTGAGGAGCTGGACACAGCCTGCTCATAGCTACTGCAGCCATCTCACCTCCTCTGCCAAGATAGCACTGACCATGGGGGTCATCTCAGGCCCCACATGGGCCAACCAAACTCTGCTAAATGTAGGCAGGCCTTACCCTGCCAGCTTCACTCCTGCACTCTGGCTAGCACAGTGGTTCTCAACCTTCCTAATGTTGTGACCCTTTAATATAGTTCATGTTGTGGTGACCCTAACCATAAAATTATTTTCATTACTACTTCATAACTAATTTTGCTACTGTTATGAATTGTGATATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCTGTGTTTTCTGACAGTAATAGGTGACTGCTATGAAAGGGTCATATGACCCCCAAAGAGGTTGTGACTCACAGGTTGAGAACCACTGGTCTAGTACCACCTGTGTGGAGACCCACATGGTTTTTGTAGTCGTTGCAGTGAGCCTGATTCCTAGGAGCGCTCTGACTCCACTCCCTGGGATATGCCGGCATGTCCTCTTGGCTGCTTTATTGGGTGGGAGCCCTCCTGGGCCCCTGATGCACTCCAGAAGCCTCAGCAGAGCATTCCCATGGGAACAGGCAGTTGCTGATCCCCTGCCCCAGCGGACTAATCCCTCACCCTGCACTTCATGGGGTTCACTCGTGCTCCCTGGAGATTGCTTTGTCAAATCGCTGCTAATAGGCCTGTGTGTACCCTTTGCTTCAAGTCACATCAACTGGGGTGACTGGACACCTGCCAGCCTGGCTGCCCTATTCTTGCTGAGTGCTCCATGTGTGGATAGGCCCTTTGGCAAAATATTCTTTCATTTCTTACATACTCCTTACGAGACCAGGCAGCTCCCTTCTGGACAAGCACTTCTGTATTATGTGAATGACCTTGGGAAGGTGGAATGGCCAGGGTTCCCTGACACTTAGTGAGACACCATGTGAGCTAGTCCCTAGGGGCCAGGAAACCCCACTGCCTGATGGTCTAGAAGTGTCTGCTGTGGGCAGGCAGGAGGGGGCAGCCGGCCCTGCCTGTCTCTCAGGGCAATCGACCTCGGTTCATTTGTGCCTGCTTCCTCTTGCTATAGGTCACAGCCGCTCTTAAGCACCTAGTGCAGGGTTTTGGTGAAGATGAATCCTGATCCTGTGGTGACAATAAAACCTTATGAATCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020140:ENSRNOT00000027353:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.007
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTGGAAAAGGAGGCAGGC
R:
CAGAGTGCAGGAGTGAAGCTG
Band lengths:
355-1165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]