GgaINT0125563 @ galGal3
Intron Retention
Gene
ENSGALG00000006958 | COL27A1
Description
NA
Coordinates
chr17:5341180-5350284:+
Coord C1 exon
chr17:5341180-5341224
Coord A exon
chr17:5341225-5350230
Coord C2 exon
chr17:5350231-5350284
Length
9006 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAAG
5' ss Score
6.84
3' ss Seq
TCTAATATTTTCCTCCTCAGGGT
3' ss Score
10.18
Exon sequences
Seq C1 exon
GGGATCCCTGGAGTTCCTGGGAAGAGGGGCAAGATGGGTAGGCCG
Seq A exon
GTAAAGTTTTTCCTCGTCTATTATGCAGACTTTGTTGAATGAAACCGAAAACAAAACATCTGGCTTCTGGCTGGGCCCCCTGATATCTTCTGCTGGGAACTAAGTGGGGAGATCAAACAAACCTTTCCGTCTCTCTTTTCTCGAGCAGGAAGAAAGCCGAAGATACAAGTACTGTTCTCTTCCTTTCTTTCATGCTCTGCCCTTTTGTTCTTTGTTGCACTCTCTCCATGCTCCCCGGGATCCTACACTGCTCAGATTCTCTGCTGCAATACCTTCCCTCCAGACAGCCCCTTCCTTAAATGTGCTTTTTAATTCCCCACTGTGACAGCAGCACCCGGGTCCCTGTTGCTGCGTTACATTTAATTTCTGTGCTCTCACCCATCCCGTCATATTTGCCTCTGTTGACTGTGGTTCTCTTCAGCCTTTGTGCTGTCCTGGTTTGTGTAATGCCAGTGCATTTTGGTGTAGAGACTTTTCTGCCCTTGGTGGTGGAGCAGAGTTGAAGCAGTGGCAGAAGAGATGAGGAGGGGTTTGCTGTGTCCAGGCAAATCCAAGAGCTTGGCCAGGAGGGGGAGGTGATACAGGTAGGGCTGAATATGAGGTGGAGCTGAAAGCTGCATAGAAGGGGTTTTGTGCTGCCTGTAGTAGGTGGGAAAAGTAGAGAAACAAGCAAAGGAAACGGGGAAAGGGCAGAAGGGAAAGTTGTCCCTGTATCAGTCTTCTTCCACGCTCTCCTGCATGCTTCCTATGCCAAACTGCATCGAGCTGTTTGCTCCAGGAGGCAGTGCAGAGAGCAGATGCGTGCGTGCCCTGGTGCCTCTCATTGCCTTTGCATCTTGTTCTTTGTGTTGGCCTGAGTGCCTCTCGGTCTCCTGACATCACTGCACTCACAGGCTCCTTGTAAAACGTCCTCTCACCCACACACTGAAAAATCCAGCGCTTTCCCCTCGTCCTCCTTGCATGCGAGTGCGTGCTTTCTAGGATCCCACACCCACTGCTTGATGTTCCTGCAAGCAAAAGCTGTGCAGACAGCTCAGCTCAGCAGTGCCACGCTCATCCAGGCTGGCTGCTCTCCTCCTGCTGAGATGGGGGGAGATGGAGCAGATTTCGGAGGGGGGACAGCAGTGGTGGAAATCTGTACCGAATCTTACAGCTTTTAATCCACAAATTGCACCAGAAACCTCTGTGATGAATAAGTGCAGTGAGCCAGGCAATGTAAGGATGACTCATTGACCAGAGTAAAACAAACAAAGCAACTGTCGTTAGGTACAGGCTCTCTGCTCGCTGTGCAGCGCACGCTGTAGGCTCAAAGCCTCCCAGCTGTTGTTTGGCTGCTGCTCATGGTCTTCCAGGCAAGAAGAGCTCGTGTCTGGTGATCCTCTGGGATCTGTGGGGAATCTCTCACCCAGGGAGGCATTCAGGCTGGGATCTTGAGAAGGGATGGAAGCACTGCACGTGAGTGCCCGTGTTCTGCTCAGAGGGTTTTGTCTCCATCCCCGTTTCATGATATCAGGTTTAATAGGAAATCTTGAATGGAGAGATGCTGTCTATTTGTACTTCCGAGCATGAGCTAAGAGGTTCTGTGGCATCCAGAGGTATTCAGGAAATCACTGGAGAATGGAAAGGAGGAAGCAGCTGACGTGGTTCCCTTCCCTGCACTTATCTCCTGCCCTCACTGTCTCCCAGCCGGGCTGCAGTGTGAGTGAGCCGGCTGTGATTTCTCTGCTAGATTTGCTGGCATGGCCACAGCTCTGTTCTGCTTCAGTGCTGTCACTGCGATGGAGAGCTCTTGGAAGCCCTTATTAGCTACCGTCCAAGGCTGGTTAAAGCTCTGGGAGCAGGGAAGGAGCTGCTATCAAATACATTTCCCTACCAAGTTTTGCTTGGTATGAGGCAGCAGCGGATTAAGAGGAGCAGGGGGCTGGGGGAGTTTGCATGTGACACCGTGGGCCTCCTGGAATGATGTAAGAGCAAATGATTAAAATAGACGAACTGGACGTGAGTCAGATTTTGAAAGCATTCCAGGGAACTTAAGTTCTGCAGAGCTATGAGGGACACGGTGGATCTGTCGTGAAAGCAGGCAGCTCCAACTCCCACCCGGCTCTCCTTGCAGCACTGGAGGCAAATGTGCTTCCAGCAGCTGGGCACCGGTGACCCCTGGGCAAGAAATAGCTGCAGTGCAGATTGTATTGAGCTTCAAATAGAATATAATGTATTCAGAAGGTCCCAAGTCCTGCTAGAGAACGAGACTTACAGGAGAACTTCCAGGAGATGTATTGGAAGAGGTTTGAGCTCTCTCTGGTTCACCTTTGTGATGGATGGAAACTTATGTCTCTTGTTCCTTTCTCTCATATATAGACTATCGGCACTGTCTCATCCCTGCTTTTAGCTTATAATGTGATTTCTTAGCAGTATTATTTTAAAAGAGATAGGAAGGCACGAAGTTTTGTTCCGTGACATTCTTAGTAATGCTTGGATTTGTTTGAAGCTTGTTTACGATTGAGCAAAGACATCCGAGGTCTCTTTCTCTCCTCCTAAGGACTTGCTGCTGCTGCTGCTGGTCCCATGCCTGGACCTCAGTCAAACACATGAAGCCTCCTTGTGTGCTCAGGTCCATTGTGCAGGTGCTGTGCAAAGAGGATCTATGAAGTGGCATGTGGGTGTTAAGTGTCATGGATGAGCACACAGGTGATGCCAGAACTCCCTTCTCACTGCCCGTTGGCCACAGCTGGGAGGTTGTGAGAGCCAGCAGTGATCTGGCGGCCACCGACATGGCCTCAGGATTTGCTGTGAGCATCAGCATGGTGGCAAGCTGCCTAATCTGGCATGCACTTCCCATGAGCTGACCACAGCCGAGGTCCCCTTTGCCAGTTCTCAGCTTGTAGCGCAGCAGAGCCTTCTTGCCAGGCTATTTTTCACGTCTGCTGTCTTCTTCCATCCTGACTTATGACGTTAATGTCTTAACTTCTGCCTCCAGTGAACACTGAGCCTCAAAATACTCTTTTTTCTCCATCTGATGAGTTGTTAGAAGGGCATGCGGTACCCGTGCACTCCCTGCTGAAATGAGAAGACTGTTGCATCATCTGAAATAGCAGAAAGCAGGGCAGACTTTGGGAAGGTTTCGTTTTACAGCCTCCTCCAACCTTATGATATACGGCTGAGATAACTCAGTGGTGAATGTAACTGCACGCTGCTTTGCCAAGTTACACAGCCACAGCTGTTGTCCATGCAAACAATAGGGGGGATCCATCTTGCCATGTGTCTGGAAAGGCTGGCATGACCCAAATCAGTGAGAAAACAAATTCGGCTCCTCTGTGCAGAGACTGAGGCTTCAAGCCTCTCCTCTCTTCTTGTTCCAGTCTTTGCTTTGCTTTGGATGCAGCTGAGGTCCTTCCTTGCATTTGGGGAGAACCAAGTGAGAGCATACAAGCTGAGATTTGGGAAACTGGTAACAGCATTTCCAAGTACCTCTTATTTAACAAATAACTGCCAAACTGTGCTTGGGTGGGCTCCCAAGGATGCAGAAAGGCTGCCCGTATGGCTTTTCTTGTAAGAACGTGACCTAGGAGTACACCCTAAGAGCTCTCACCTACAGCTCACGTGGGCTGCTAATGCTCCAGCCGCGTGTGTTTTGTCTGTATGATCAGTATATATCCTCAGAAAATAGCTGCTCTTCCATAGCTGGACTGCTCAGGCCTGATGCACCCGAGCGCCTGGCGAGCTCTGCAGACCACAAAGGATTCCTTCAAACCAATGTCCCACATCAGGTTCAGCTGTTTGTTTCCAAGAACGTCCTAAGAGAGTTGTCCGTCATCAGTCAGAGAGCTTGTGAAGAATTACTTCAGTATCCCCTGAGCACCAGAGCATCCTTCTTCCTTTAGGGAAATGCTCATTTATAAATCAGAGCAAAGACCAAAAGTGTTTTTCATTACAAATAAGATAAACTAATGCCGCCATCACATTTGACTCTGAAAGCATTTTGATCTTGACTTTCTTAAATAGGAGGCTGCTAGACTTGGAAATCTTGGCCGTAAATAATTAGGAGTGTTGGCAGATTCAGTGCTCTTGAGCATTAGGTAATTGAGTCTGTGTAATCTGCACTCTATCAGAGCCCGACAGAAGCGGGAAGAGAACGTGTGTGAAGGAGTGAAGTGGGAGGTTGGGAGGGCGGAGGGCTGCAAGTTAACCTCAGTGGTGCTTGGCTGAAAGGGCTTCAGTGGACGTTGGCTCTCTTTCAGGTGGAACTGAAGGCTCTGAAGGGCGGTTAGGCTGAAAATGCCATGAAATCTTAATCCAGAGAGGATGTGGCATGGAGATGTGAAGTGGCAAGGCTCTGAGTGCCAGTCCCCAGCTCTGAGTGGCACCTCCCCTCTCTGCTGGGATGCAAGCTGCCGCAGTCCCAGCTCTAGATTCAGCAAAAGGCAAAGGCTGCGTAGCTGCGTGTATTAAGCTGGCGAGTGGGCTGGGCATGGGGGCTTTGCCAGGATCCCTGCAGGGCCACTCGAGGAGCCGTTGCTGGGTGTCAGCCAGCCCTCGTGCCCGCCGGTGCGCGGCTCACGTCTGCGCTCTCCACCAAGAGCGCTCTCAGAGGCGGACGCTGCCAACATAAGCTCCATTTGTTTATTTTATTCTCCCTCTTTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTTTTTTTTTTTCCAGTGAATGCCTTCTCTCACCCTCAGCCCTGCTTCCCCACCGTTACCTTTTTTGTTGCTGTTTAAATTGTTTGACTTGCATGCTCCATCCCTGTGGAGGCTGCTGGGCTGAGACTTACCTGCACGGAGCCAACTGGCAGATGCAGCCTTCTGCAGACAAGACAGGAGGGCTGGTTGGTTTGAGCAGTTTCACCTTCAGCCAACAGGAAAATAAAATCCTATTTTTGGAGAAGGATTCTATTGGCGTGCAGACCTGCCAGGATTCCTCGGAGCAGCAGCTGCCAGACTGCCTCCCTTACTCCATCAGGAAAAGTGTTCTAAACTGAATCAGATGTTGTGTACGTACAACACACCCACCCACAGGCACACACCTGAGAGGGCCGTGGGGAAGCAGAGGACTCAGAGCATCACCTGGCCCTGCTTCCCTGGGGACAGCAGCTTGCAGGGATGAGAGCTGGTGGCGTGTGTTTAGATCTGGAGCAGCCCTTTGGCTGACAACAGCAAGCAAGGGCAGGCTGCTCTGTTTGTTTTAAGCAAAGGAAGAAGGAAAGGGGAGGTAGAAGGGGATGTTATCCCCTGCTGCCTTGGGGCTGATTCCAGTGTCTGTCTCGTGGTGTATGAGAGGATGCCCTTTGCAGGGAGCGTGGATGAACAGGAGTTGAGGCACAGCTATGGGACCTCAAAGGTGTAGATTTAATTACTGGTTCAGCTTCAGACTTCTTGATTTTATCTGGGATAAACCAGCTTGCACCAGCATTCCCTCTCCAGCAATGAGTACTGAGGACAAACTGCACTGGGGGGACTGAGAAGGGGGAGGTGCAGAGGGGAGCACAGATTCATTGGGTTTTGCTCCTGCTTGTATGGCTTTTCTCCAACCCCTCTTCAAGCACCACTTCGCTTCTTTCATTGAGTTTCTCCTTCAGACAATGTGAAATCCACTCAGCTGGGCTCCTCTCTTATTTTTTTACCTTCTGTATTTCCCAGCTGAGAGATGGAGCCAAAAGTTTTGTCATACCTGACTGCAGCCACTGCGGAGGAGCTGGCTCCCTGCCGGCACAACTTGTTAGGAGAGCGTTTTCCTCCAGCTCTGCTGCCCTTTGCTGTCCCTTCCCAGTCCTTGACTTTTTCCATGCATCCCCGAGAGCGCTCAGGATGCACAGCTGGATGTTTTCCACTAGGCTGTTGTTCTTTGCTGTCCCGGTTTTTGAGAAAACAATGGATTACGCTGTACCTAAAAAAAATATATATATACAACCCTCTGCACTCAACTTTGGGAAGGTCGGGGGAATGGGGGCTCTGTAATCCCCTCCACAGAGCTCCTGCAGCAGACAGCCCACCTACCTGCGTGTTCCCCACCAGGTTGGGCTCAGGGGAGGGGGCACAGAGCTGCTGTCCGGCACCGCAGGGATGGAACCAAGGGGATAACAAAGTCCTCTTGTACTTCCTAGGCTGCTCGTTGCGGTTGAATAGCACAGCTTTTATTCCCGAGGAACATCTCTGTCCTCAAGGCTGAGGCAGGAGGGCTGAAAAAACAGCTTTTGCAGACATGTGAGAGCCAATGAATTTAGGACACTGTGGTCACTGGAACGGTAATTGTGGTTTAAGCTGCTACTGCTTACCCCATGGAAAGAGAGTGCTTTCTTTTCATTAGGTGCTTAACAGATTGATTGCCTCCTGCTGTGAACAGGACTGTGCTATAATAGCTTTCACAACCCGGATTGAGCCTTTGGAGACTGTAGGGATGCTGAAACATCCTCCTTCATGCCACAGCCACCAGCCTTGGTCTCATTTAATGTGCTAAAGTGCTAATCCGTGTGCTGCCAAGCTCAAAGCCTGGCTGAGGATGCGCGGGTCTGTTGATTTAAAGCTGCTTTTTCCATTGTCTCCTCTACTGGGTTTATTTTACAACGTGAGCCAAAAAATGCCATGGGACCAAGCACCATCCCAGAGACCTGTGGGCTCAGGATGAGAAAGGTTCTCAATTTCCTGTCAGTTTTACTATTTTCCATCTCAAGGATGGGAAGAAAACACAGCTGCGTGATGGGGTCCACAGACAGCTGTGAAGGGGTTTGGTTGTTGAACCTCTACTGGGTAGGGTTGGCCAAGTGGCCTCATCTGGGTGCACAGCTCTCTGCCTTCGAAACAGGGATCATCCGCTTGTGTAAATACTTGGAGAGCAATTGTTGGAAAGCCCTATAAAAGCGAGAGGTGTATTAACTCTATTAATGAGTTAATAGAGTTAATAATAAGACATCTCCCATGTCTTTGTCTTTGAGCAGTGAGGTTAGTGCAAGAAACTGAGACATAAAAAGAGATCAGCGGGAAATGTGAATTTAAATACTTCCTTATCTGGATACTTTTTTTTTTTTTTTTTTTTTTCTGGCAGAAGAGTGCAATGTTAATATCACTGTGGAAAGATTTAACCCAAATTTCTTAATCTGAAGCAAGCATTTCTCCAGATGATACTATGCAGCTGTAGCTATATTGATTTAATTACACTGTTATGAGTGAAACCTTCCCAACTGCACAAGGCCTTGGCTCCATACAGGACGCCTCAGCAGCCCCAGGGCCAGGTTGCTCAGTGGCATCATTGGGTCCCTTTGTGCCCAGCTGTGCCCTCTGCGGAAAGAAGGATGGGGAATTGCTGAAGGCTGGCACTGCAATCTGCAGCAGTGTGAGTACTGTACCGGTCTGTGCCTGCTCATATTTTCCTTGGCCAGCTGTATGACTGTAAACAGCAAAACCTTACAAGACGCTTTTTTTTCTGTCTTGCCCGAGCAGTGAGTTTTCCTTACATGCATCTCTTCTGATTTGATTGATTCAGCATGTAGCTGAGTTCTTTTTCCCTTCTTTTTTGTTAAAGAAGATTTTACCCTCTTCCAACCCTCCCCTTCTTGTTATATTTGACATCTTTGTCTCTAGGTGGCAGAAGGCTGTTGCAGTGATTGCTTACCAGAGCTTCTTGGCTTGTGCAGAAGCTTAAGGGATGTAGTGCCCAGCTGGAAAGGCAGACAACTTTCCCATTCACAGTGATGCCCATAAAATAGAATTAAGGAATCCACGCAAGTAGGCAATAGCTTGCATCCATTCATGAGCGTGTACTGATTACCACAGAGAAGTGGTATGGAGGAGGTGAAATCCTGTCATGTTGCCTTAGACATGTCCCCCATATTTCACCTGGGATGTAACCAGGTATCTTCCTATAGGGTTGTGTTGGCCAGGAGTTGTGAGCCATCAAAGGTGAAAGGAGGTCTGGCTCTGACTATAACAATAGTCCTTAGCTTTCCATCCTGAGGTCCACAGTCAGCGTAGTGTAATAAATTAAGATGGTGACTTTTGGTAAGTGGTGACTTTTTCATGTAGTAAACATGGGTTTTCGTGACTGCAGAGTGTGGACCATCATGAGCTTGGAACTGTTCATTCCTTTGGCAAGCTGCAGGGTTGTGGGTGCACAGGAAAGAACTCTCCATGCATCTTTGATGAGCTCCATTAAGCATGATGGGATCCAACAGGCATTAAGCCATATATCTGTCCTGTGAGAAGGAGACACTGTCAAAACTATTGTCACCAGGAGGAAATAATTCAGGCTGATGGTCCATTTCTGAGGAGGACAGTCATTGCAGCAAGGATGAACTCATCCAGAATATAAATGATTTAGGATCGACTTTAAAGGAGGCGCTGTGTTTATCAGTAGAACATTTCTTAATCTTTAGATGCAGAGTTTGGTCTTGCAAACGTGTGATTAACACTTCATTTGTCAACTATGCAACATAACCTTCAGGGCTGCATTTTCCTTGTTGGGATGTATGGGAGGACTTGGGTGAACCAGAACAAAAGCACTGATTTTCACCTTTCTCTCCTATGCACACTCACATTGACTTTTACATGGCACTGCCAAAGCCTTGCCTGCTGTACGAAGTGTGCTGAGGGCTGACAGACACCGTTAGGAACAGTCATGGCTGATGTGAACACATCAGACCCAGCAGCCTCAGCAATGGGTGCTTTCCACAGCACGGCCAAGCAAAAAGCCTTCCTGTTTCCTCGTTGACTTTTCCTCCCCAGGCTCCCACTGGTTAACGCACAGCTGATGGCTGAGCCTGGTAAATGATGCTTCTGGTTACCCTTCATTGGCCCCAGGAGAGGGGAGGGAATCAGCTCCTGGCCTTGCAGAGCTGCTTGCTGAGTGAGTGTGCTGTGGGTGGGGTGTGAGCAGGGGGCTGTCGGCCTGGGCTTCCTTCTGACCTGCTGGCTATTGAAGTGCTGCACTGAGTGCAGGGGGAGCAGTTTTTAAGCTGGCACCATTAACTCTAATATTTTCCTCCTCAG
Seq C2 exon
GGTTTTCCTGGTGATTTTGGGGAACGAGGACCTCCAGGCATCGACGGGAACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006958:ENSGALT00000011272:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]