GgaINT0125572 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NHH4]
Coordinates
chr17:4726912-4728855:+
Coord C1 exon
chr17:4726912-4726965
Coord A exon
chr17:4726966-4728810
Coord C2 exon
chr17:4728811-4728855
Length
1845 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TTAATTTCTTTTCACCTCAGGGA
3' ss Score
8.93
Exon sequences
Seq C1 exon
GGGAAGCCGGGAGCGCGGGGTTTGCCTGGGCCCAGAGGGCTGCCTGGACAAGAG
Seq A exon
GTGAGCATCCTCAGACCTAAAGTATGTGGGATTCAGAGAATAGCGTTGCATTTTGAAGATCAGTGCACTCTGCAGTGGCGCCTGCGATCTGAAATCCTCCGTTCCCTCTGAATCTGGAAGTAAATGCTTGTATTCACCAGTCAGAACCACACAGAGGAGCTTCCAATGGCTGCAGCCCTGAGACCTTTGCTTCCCATCCCTGCTGACATCTGTTGACCCGAATCACTGCATTGCCTTTTCTTCTTCAGTCTGTTCCCTCACACCCACACACGCTTCAAATGGATGTTAATGCCCCTTTCCCTGCACGCCCCTTTGCATGGGCATGCCCTGACTTGGCTTTTGCTTTCTGCTCCTTTTAAGTGTGTTTTCTTTCAGCTGTGAGACCTGCAGGCTCTGCTCTCTCGATGGAGCAATATGATTTGTAAAAAGAGCACATCAGCTGAAACTGCTGTTCTGCAAAGATTTGTTTGCCCCAGCAGCTCTGAGCCTGCAGCTTTCACCTCTCATAGCTTGGGAAAACCTGAAGCTTCCTTCCAGTTGCAGTCATTAAAACAGGACGACTGCCATTGATTTAATTGTCCTGGAGCTGTAAATACTTTATAGCAGCTTCTGTGGCTATAGCGTGGTGGCTTCCGTGTGGTTTCTTCTCATTCAGGTCAGTGTTTGTCTGGAGTCATGAAACATTTTGCAAAACACACTCCATGAACACACGGGCAGGAGCTCGGTATAATAGCAGTAACCAGCCTCGCTTTTTCTGGGAACTCTTTTGCTTGCCCTCTAAATGCAATTAATGCAAATTAGCTCATTTATTTGCACTGAAATAGGAAAAAAAAATATTCTAGGCAATTTACAAAGGGAATCAAAGCTTCGCATTCCAGGTTCAGGCAGGCATGACCAAGCTGCCTTCAATTTACTCTAGTTAGCGAGTGTAAAAGTAAGACTGAAGACATGGACATGGACTTCGACATGAGCTGTGCTGAAGGACTGTGAACGTGCACTGCCACAGCGCTGCTGTTAGCCCAGGCCAAGGCTGTGAGTTACACCTTTAGAAGTGTGCCATAGTGTGGGTGTGTGTCTGAGCCCGCTGAGCTGGGTGCCCGGCTTCCAGTCCCAACCTCAGCCCGCCAGCTCGTGCCACTTCATTACCTCAGCTTGACCACCGAAATGAGAGCAGCGAGAGCTGAGGCTGCCAAGGGCGCTTTTAATTTCTCTCTTGGCAGTTGGTTTTGGACACTTGAGATAATTTTTGTGAAGCTTAATTGAAGGTCTCCTAGAAGCTGTAGATCTGATTCTATCACAGTTGGTGTAGAGCCAAGGGAGAAAGCTGAGTCCAATCGCTGTGTGAGATTTTGAGATAGCTCCATCCTGCAGCATGTGTAGTCCCATTTGAAGGCAAAAGGGAAACCTCCACACTGGTGCCAAGTGGTTCTGTGGGAAATTTTTTTTGTGGAAAATAAAAGGAAAAGAGTAGATGGCTCTGCAGCATCCATATCACTGCCAAATCAGATGAAGTAGAGTTCTGTGAGTGTGTCCACTGTATCCCATGGGCTAAATCCAGCCATGAGAAGCCCACACAACTGATGTTGACTTCAGTCAAATTTTGGATGGCCTTTGCCGACAGGACTTGACTTCAGATTTTATTTCTGAGACGAGGAAAGATGAGCTTCAGAGATGCTGAGCTGCCTGCTCTGGGGTTCAGAGGGACTCTGTTGTTAAAACGTGACAGCTGAGCAGACAGCCTGTGTTTAACCACTTGTTCATCCTGCAGACCTTTCATTCTTACTCCATGGTGAGTCCAGACTTTGTCACTACTTTGCTCATTATTTTAATTTCTTTTCACCTCAG
Seq C2 exon
GGAGATGAAGGACCCTTAGGACCACCAGGAGTCCCTGGTTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006958:ENSGALT00000011272:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]