GgaINT0125575 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NHH4]
Coordinates
chr17:4731245-4736964:+
Coord C1 exon
chr17:4731245-4731289
Coord A exon
chr17:4731290-4736910
Coord C2 exon
chr17:4736911-4736964
Length
5621 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
GTGCTTTTCTCATTCCTCAGGGT
3' ss Score
10.41
Exon sequences
Seq C1 exon
GGCGAGCCAGGAAACCACGGCCGGCCGGGGAAAGTTGGTGAGCAG
Seq A exon
GTAAACTCCTTGTTTTCATGTCTATTTGATGATCTCCCGTGTTCAGAATCTCCTGGATGACCAGAGTGCAAGCAGAGGATGGAGGCCATGGGTTTCTGTCTACCTCAACCTGGGTGTGGTCCTGGTGCTCTAGATGTGCTGTGGGAAACATGTCATGTAGTGAGGCTGAAGCTCTTAGTGAACAGCACTGACAATGGCCATGGGGTCTATGTTTTCCCATAGGCGGTCTGGTAAAGTCATGGTTCGGTGTAGCGCATAGGAATGGCTGTGCTTCTAAAGATGAAGCCGTGGAAATTGACGGGATTATGGATTTCTGCCTATTCCTCTTATTCCCAAAAGGGAAATTCCCAGCTTTGCTTATATAGGTTTGAAGCATCTCTGCCCTGAGGTGCTGTACTGCTTTCAGATGAGGCAGTGCTGGGTAAGAGAGGCACTGAGCTGCATTTCATTGTACCGCAAGAGAGAACGTTCTGCTGGGTTACCAGGGGACATTCATCATCCCTGTAGGCTTCAGGGTAACCACAGGCATCAAGGAAAAAGAAACAATCATCCCATGTCTCTGTGATTGAAACCAACCAAGTTGTCCACCGCCATCCCTGAAATTGCAGCCACGGAGCCTCCGACGTGTTCTCTGCATTCCTACATGACCGCACCGTGCTGGAGGCAGCAGCTGGCCCTGGCAAGGATGGTGGTACTGCTCAGCACAGCGCTTTCCCTGCCTATGGTCAGTGACTTTGGTTGGGTTTAACTTGTCTGCTTCCCCTGGATCCAGCAGCTTGGGGGTTGCTTATGCATGGGTCTCTGACCAAGCGCGTCCAACAAGCCACGGTGGATCCTATACTTTTCAGTACCAAAGCTTCAGTATAAGTCAAGGATGATCGTTTTTGTCTGGAAGTTAGCACCACTTCTGTGTTCTGGTTAATAATTTACTCCATGAAGAGCAACAACTGGAAAAACAAGGATGCTCCTCACACCTGAAGTTGGGGCCCAAGTGCTGTGTGCAGCTTTAGCACCTTGTCTTGGGCAGTGCCTTCCTCTGCTCCATGCCTGCTTCCCCTCCTGTGGAAGACACAACACAGAGCTGCTGTCAGGTCCAGGGCCCAGTGAGAGGAGAACTTCTGGCAAGAAACACCTGGCTCTGGCAGTGCTTACCATGACACCTCCTGTTCTCAGGAGGCACCTATTGTATCACAGTTAAAAATGAATGTTTAGAAGTGCTTTGAGTACTTGAACAAGATGTTGAAAGACAAGCCATCGTTGGGATTGTTATGCTTTAACGTCCCTCAGGACTGACCTTGGATGGAAACTGTAGGCACTGTTCACTGAAAAGAAAACACAGCTGGCCTCCGCTGACACTGAGACCAGCATGGTGGTATGAAAGCTGCCTGTTTTATTCTTAGTCAATTAGTCTCTGTCTAGAAATATCACCCAGAAAGAATTTCCATTTCCATACCAGTTAAGTCATTAGAACAAAAATGTCATGCCAGATTAGTGAGAAATAACCTCCCTTCCCATCACACCTTTGCTGGACAGTGCTGGAGTGTTGCCTTCTCATTCCTTCCTCCACCTGAGCTCCGGTGTTTGGTGGTGAGGCAGGGCTGGTTTTTGCAGAGCTCTGAGGGTTGAGCTAACAAGGTCACTTGGTGCTGAAACCTTCAGCTTATCCCTGTTTTCTCCTTGGAGATCTTGGTGCTCAGATGCTCCAGACTTGCTGCACAGACCTCCCTGCAGTCCCATCTGGCTGGAAATGCTCAGCAGGGCAGCATGCGGAAAGATCTGCCATTCATCCCACTGGAGGTCTCTTCTCTTTGCGTGGACACCTGTTTGGGCAAACATAGGAATTCCTGTAAGGCTTCCAGTGGTGGTTGAGCTCTGTTTAAGAAGAGGAGTATTTAAGCCACAGGGCAGTCTCTGGTACGTTGTTTTCCCATTGCAAGGACACTGACTTGGGAATCGCATTCATAAGATGCTTGTTGCCTTCAGATGCTGGAGGGACTCCATCTGCTGAGTTCTCCTGCACGCTGAAAATGTGTGATTTAACTCTTCCTTGCCAGCATATGGAGACAGAATAACCGGATGAAGAACCATCAGTCTGCCCTCCCAGAGCTTGGAACGCCAAGCAGGTCAATCTCACTTGAGATGGCACACTGAGGAAGGGTACCACCAGCCTATGAACTCACCAGCTCTGTGCTAGAGGCTGAAAATATCAGCGGAGATTTGTGACAGCTGAAAAAGGCTAAGGATGACCCACCTGCTTCATGGGAATGAGGTTTTGTCATGGCAGAACAGCTTTTGGAGTCCTTGCTCCTATAACAGAAGCTTGCATGGCAATGTCATGGCCACGTCCCCATCACACCCCTCTGAGAAGGGCAGTCAACAGCAGTCCCGTGGGGTACCTCTTCCTTGGAGGCAGCATATTACCCCAATAGCCAATGTTACTCTGAAATAACTTGTCAAAGGAAACCAGCACCATCACTTCTCTCTGAAACGCATTTTCCTCGCAGTGCTCTCACAAAGGAGGGAGGTGCATCAGTTCTGCAGGTGGGATCCAACACACAGAGGTAGGGGTGAATGAGTCACAGAGCAGAGAACTGCACCTCTTGGAGCAGTGCCTTCCCAATGCATGCACCTTTCCCTCCAACATCTTTCCAAACTGCAGCCCTCTCTGGGATCCCCAGGTGATTTATAGGTGCTCAAGGGCACATGTTTCCTTCACCCACATCCCAGAGTGGAGCACAGCGCTGCCCCGCGTTATGGCTGAGCTCCAGCATGCAGAGGGTTAAACCGCGTGGCTTCTCTATGCGGGTCAGAGCGTCCTCCCTTAAATGCAATATTTACTGTTTTACTTTCCCTTTCTTTCATCTGAATGGGAGGATTGTACATTTACTCCCTCCCGCCCTTTGTCCCTGCTTTGTTTTGTTTTGAGTTCTGGCGAACCAGTAAAACAGAAAGGCCACGATCGGATCCTGCTGGGAGCGACTGGCGGTGCCGTCCCCGGGAGACCCCACTCATGCTGCGCTGCCGTTCCGTCCTTTCTCTCAAATGGGCAATGATTTGTGCAGGGCTTCAGTGCCGACTTACTCTCTGTTGATGAGAGCAAGGGGGCGGGGAGGGGGGGCTTAATTATGACAGCGCTGGAGAATAAATGGGGAAAACCAGACAGGAGTTAGGAATTGCAGCCCACCGGTTTGCCCCTTTCCATCCCCCAAAGCCCCAAGCAATGTTTTAACAATCTCCATCCCTTTTCCTCCGTGCCCTTGGCTGGGGCACGCAGCCGGAACCACAGCGATATGCTGAACCCTCCGTCTCATATAAATGTTTTACATTCTTGCCTGTGTGCTGCGCAGCCACCGCTGCTGGGACTTCACGTGCACCGTTACACACACTGCCTGGAGCTGTGTGTGGCGCAGGGCTTCTTTCCAGCCCAGGAACCTGGGAAAATACATTACACTGCAGCCATTTTAGTGTAACGTCCACTGTTCACGTATGCTTTAGTTTAATGTTGGCCACCAGTGATTCTTCTGGTTCTTATAGCTAAATATTCTGCTGCTTGTGCTCCCTTTGCGTCTACCATTTTGGCTGGTGAAGAACGTCATTACCCGATCTCCCCCGGTTGTTTCAGGTACTTCCAGTAACTTACCTTGGCATGTCCATTTGGTGTTCTGGCTGCCTGCAGACACAGCACTTGATGTAGCCCAGAGCAGACAGCATTGGCTGCAAACACTGCAGAGCTCCTGTGCTGGAAGCCCATCTGCATTGCAGGGTCCCCGCTCAGTATCGTTCTGAATGGTGACAGCACTTGCTGCAAGAGCAGGGAGTCCCCATTCTTCTGAAGGTTACTGAAGAAACCCTGAGTTATCTACCCAGGGAGAGGGATTCTGCAGGTTTTTGAGAAACTGGAAATGAAGGAACAGATTGACTCTTTCTTATTCTTTTTATCTATCATCTTCTTGTTCAGCAGACATTTCCTTGCCTCATCTCATTGCTTTGCCATTCTGCCATAGCATTTGCCTTCTCTGTGGCCTCAGGCTACTGGAAAACTTCAGTGACCTGCAGCAGTTATCAGCTAAGTGTGTGCACTTGTGCCTAATTGGATGGGTAATTGATTCAGCAGCCTTCAGCAATGCCACCCAGTGGCAACCTTGCTTATGCAGATGCTGAGCATTTGCCTTTGGTCCCAGTGGTTCCCGCATTGGGCCTGCACTGTCCTGCCTGTGCGGATGTTGGAAGGGTTGGTGACACTGGGATGGCAAAGCTGCCCTGGTAGTGGCTATCTTTCCGTCGTTAACTGATATTTCCATGGTGGCACAGTGGCATGGCAGGTACCTAGGACATCGCCCCTGGATGAAGTTCTCGCACAAGCATCTCACTCCAGGCTCTGAGCTCTCCTGAGCTTTTCCAAACACTCCACACCTGGACATTGCTCCCATGAGCACGATGAGGGCTCTGCAGCTCCTGCTGCTTCTGCTGAGCCCATCAGTGCCTCAATGAGGAGCTCCCGTCTTCAGCGATGCTCAAAGGATGGCATTTAATTTTACTGTTTGAAGAACATTAACACATGAAGTCCCTTGGCGTTTGGAGTTCTCATCCAGGCAATACCAATGGCGAATCCATCCGGTCCATGCCTTGCTCAGCAGCCACCTCCCAGCAGCACTCAGGCTGCCTCCTAGGACTGAACAAGCCAGGACACAGCTGAACTGATACCACCCTGCCAGCCCTGGGCAGGTTGTGAGGTGTTTCAGCAGACGGATCCCCTCCATTACAGACTCACTGGATTAACGACCTAGAGATACCTGTCTCCCAATGACTCTTGCTGAGACTGGGGACAAAATCATGAGGACTGCATAGTGAGAGCTGGCGGTGGCACAGAAGACAATCCGTTGCATCTCCAGAGCCAGAAACCCGCTAAGTTGGTAGGAAGGATGCTGTACATCAATGCTCCAGAACCTGAACTTGAAATGGCGTGTTTCCACCTCCCTATTTAACAGCACGTCTGTGTTTTCTTCATTATCCCAAATGCAGCTAAATGCTGACTAATCCTGTTTAGCCTTTTTTTGGGGTTGTTTTCCCAAGATAGTCTGTGAGTAGTGGGACAGACCTGCTGCCCTGCTGACCCCTCAGACCTTTATTTCCTGCCAACATCCCAATAACGTGACACTATCCAAGGCGAAATGAGTTTGCACAAAGGTCCAATTAACCCAGAGGAAATCTAGCCAGTGCAGCAGTGAAAATAATGGTGACTCCCAGTGTGTGCAACCCGGGAGCTCCCGCTATCGATGCTCTTGGGGAAGCTGTGCTGACATTTAGGGAAATGCTTGCAAAACAAAGCCACGCTATGAGCTCGGCCTCTCTAGGAAATGTGCTGAACTCATCCCCTATAGTGTGCGCTGTGGCTCTCGCAGATCCCAGTGCTGCCGTTCCAGCTGGTCCAAAGCAAAACCAGCTGTGGAGTTCAGTGTTCCTATGGCCCGGAGCACCCTGTCTGCTCTGGTAGCCACTGGGAATTGCTGAGCAGCACACAGGGGATGCTAGACTGCCTCAACCAACAAGACAGACCACAGAAATTGTTTACTTTCCGGCAAGTAGAACCGAGAATTAATTGTGCTTTTCTCATTCCTCAG
Seq C2 exon
GGTCTAATGGGATTCATTGGTCCAGTAGGGGAGCCTGGAATAGTGGGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006958:ENSGALT00000011272:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]