GgaINT0125711 @ galGal3
Intron Retention
Gene
ENSGALG00000001037 | SCAI
Description
NA
Coordinates
chr17:10272033-10276330:+
Coord C1 exon
chr17:10272033-10272114
Coord A exon
chr17:10272115-10276257
Coord C2 exon
chr17:10276258-10276330
Length
4143 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
AAAATTCTTATCTGTTACAGAAT
3' ss Score
6.97
Exon sequences
Seq C1 exon
TCTTCATCCTGGGGATCTCTACCCTTTCACAAGAAAGCCACTTTTTATCATTGTGGATTCTTCGAACAGTGTGGCCTATAAG
Seq A exon
GTAAGGCTCTTTACGACAGCTGTTTACATGGTAGGATACAGTGTCAACCCCTAGTTAGCTTACACTTTGAACAGGATATTTTTTTTAAACACTTTGTATTCAGTCTTTCTTTTCTTTTGAGGTTGTGCATGCTAGTCAGGATCTGACCCTATGAATAGGAACAAGAAGGAGAAGCACATGAACAGCCGCTCATTGGAAAGTATTAAATCCTCCTGGAGGGAATAAAAGTTCAAGATTTCCAAGATCTCTGGTGGGAGGTTTATTTTTGTTATATACCAAAGACAAATCTTGGTGTGTGTGTGCATGGGGGAGGGCACTAATTAATCTGCTTTTTTTTTTTCCAGTCTTCCAGCACTCAGTTGCCTTTAGCCACCAGAAACAAATCAAAGCATTGAGACCGATCTTTTAAAACATGGGGTGTCTGTGTCTGTAAAGTATCTCAACCAAGAAAATAACAAGACTCAAATTAGCATCCAGTGTTACTGTAGAGTGATGTATGCTTGGACAATGAGTCTCCTTCTAGGGTGCTATCAACTTAAAATAGAATTACTCCATACCAAATCATATTTAAAAATCTGCAGTTCGGGTAATAAGAAAGCAGGCATTTGCAATCTGAGTTGGCTGTTGCATCTGGAGAGCATTATGACACTTATTTCACTCATGAATTAGATATTATAAATGTGCTATATCTGGGGAAAGTGCCACTTCCTTATGTCTTGCTCTTTATAGCTCCATTATTTACAGTGAGAAAAGTGAACATTCAGAGCTACATTTCTGAGGAGGAGTAGAGACGTCTAGTGGCCAGATGAGCTTGTTCTTTGTTCAGTATCCACAGTCGGCATCATTTGTTTTAAAGACTTGTGTTGGCTAATGAATTACTAAACTAGTGATTAGATGTTTCAGAACTGTTCTGTATTGAGCCACGTAATTCTTACCTAACAGTCTTAAAAATGATCTGACCTCTTTGGAGAGTGTTGTTTGTAGTATTGTGGTGCATTTCAGAGGGCTTTTTAACCACTACTGTGTTTAGCTTCACCACGCTAGCTTGCAGCACAAATCTGCTTCTTATTAAATCTCTTTTCCATTTAAAGGGAGAGAAATGTAATTAGGGTGCTTTACTTGTCTTTCTGAGAAGAGAATTTGGTAGAGATTCATTTTTCTCTGCTTTTTCTTGACATTGATTCCTCTGTAGTTTTTTTTGTTTTCTTTTCAACTGACGGACAGTGACGGAATTCTGAATCTCAGTATTTCCCAGCCCTTGTAAATTCCTGTCTCTTGTTGTGTTCTGCATGTGCTTACGTGCTTGGTTTCATGTAGCCAGAATATATTAACAGTGCTGTCCTGCAGGTATCCCCTAGATGCGTTACAAGGTGCTTTGTAGACTTAAGCACTGGCATAGACAAAGAGGTTCTGTGCAATTCTGTGAAAAGTTGAAGTCTGTGTACTGACTTTTTTTCTACACGGTCGCTCTGAACTTTTCTGATAGGAGAGCAGCTATCCTGACATTTAAATGTCACTGCTAGCAACACCAGCACTAACAGCAACTGTTCTAAAACCCACTTCTGATCTCCTGCGTGCACTCTCATCCTCACTACCTTTCTTGAAGGTTTAAATAGTGATGGCTGAAAGTACGTCCTGCCCACTTTGTCAGACAAGCAGCACTTACTTGATCAGCTTCCCTGTATATTTAGCTGAAAGTTGAAGATAACTGCAAATCAAGCACATCTACTTGAAGCTTTTATTTATTTATTTAGTTTGAACCTCAACTGAAATATAGATGGCTGTGTTCTTGAAGGTTACCACTGTATATGTAGATGAAATAATGTTTTAAAATCAGTATTTTCATGTAGCTGTGGTTGTGTACAATTACAGTCAAATGCAGAGTGTTAAAGAGTACTGCTTCAGCCAATAAGAATGCCAGGCCTTTGTCAGTGATGTGACGTAATCCTCAATTTAGTAGAGCTTACACATGAAATGACCTTTTTTGGAGATGACAGGTGGTTCTTTTTTGAAAAGAAGTGTTTATGAGATGTGAAATGTGTTTTTAAAAGCTGTATTTCTGTTGAGAAGCTTGAATACTGAAGTAAAAAAAAAAAAAAAAAAAGAGCCAATTTTGAACCAAAAATGTGGTTTACCCCTTTTGGAGTTGTCCATGCACTGAAAGGCAGGGCATTTCCTTATCTAGAACTGCTGTCAGCATTCATTCTGCAGGGCTGTTTTTTCTGGTGCACTGTGTGGTCCTCCCCTAAGCCATGGCTGTTACCTGCTCCTTTTCCTTTGGTGTGTGCTTGCAGATAACTCTTCCCTGTGGAATTCAGGAGCTAAGGTGGTGGAGTGAATCCTGGTATTCACTTGGGCTGTGGTTGGCAGTTGTGTCTGGACGAGAGCTGAGACAGGTGCCCGGAATCTTGAGACTTGCATTCTCCTGGATCCATAGTTTAGATGTAGCAGCTGGTAGAAGCAGCCATCTTACAAAGACTTTTGTGTTAGAGTAGGCTGGGTAGTTTTTCCCATTGTAGGACTTAGTAGTTGTATTGACCTAACCACCTGGGACATCTATAATCCAAAATGTTCACAGATGCTGTCAAGGAATAACGCCCTTCTTGAGATGTGTGACTGACCCTTGGTTTTACTTTATAGCTGTAGGCAATGTTTAATAGCAATATTAGTTTTATTGAGGGAACATGTGAGAAATCTGCATTGGCCTCTAACTGAGTGATAGAAGATTGAATTCAACATGTGAATCTGCTCATGAATACTAAGCACACATGTTAATTGAGAATGTGTGACCTGCCAACGCCTATTCATTCAAACTGGCAATGTCTGTAGTGACTCCTTCTGAATTTTAAAATGTTTGTTTATCATTCACAATTACTAAGCACTGAGCTGGCTGCAGATACTGTCTTCATGGTAGTAGTTTTTGTTTCTTCATTAGAGACTGAACCTTAATATCTGGCATTACAAATCTCCTTCAGGATCTTGTTGAAATAAAGGGATTTTTAGCACTAGTGAGCACTCTGTCAGATATTGGTAGTAATTTTTTTTATTTTTTTATTTTTGGACTGGATTATTATCTTTAGCAGACTTGGATGAAATTAATTCTGTGAAACTAATTTAATTGAAATACACTGCCTGGAAGGGAATGTTACAAGTGAATTATGCAGAAACCAGTAAGAATTAAAAAAATGAGCTTTTTAATGATTTTGCACAAGCAAATACTTCTGGTGATTTAGACTTGACATTCAGAACCTGCCAATTTTAAGAATATAATCTGCAGAGGTGTCTGTTGCGCTCAAGCTCTGGGTGCGTAGGGAAGGATGTAGACATAATTGTTTACACTTTTTCTGGCTTTGCAAGCCTGCAGTTTTAAGAAAGCTGTTGCTGACAAGAAAGATGACAGGTAATGTGGGGAAGTTCATTGTGGATTTCTTTCGTGGTAATCATTATAACCAATCAGTATACCTGTACTGATTAGATTAGATACGTAATAAGATTATTACCAGGTAGATGGTAGTGAAACAAGAGAGACTTCTTTTAAGGTTTCAGGAGGAATTTGTGTGCAACAAGATGCAATCCTTAAAACGTTGGTAGAAGGTCTGTTAAATGGACGTTTTACAATGTGGCTTCAATACAGCAGATGTTAAGGTTTTAACCTACTTGTTTTAAAGTGAACAGATTTTAAAACTTTTCTCCATTGGGCTCTTCTGTTTCATCAGCCATAGTTCTCCTGCTAGAAAGAAAAGCATTAAAAAAGCACTTTAATGGGATAATTCCATTGGTATTGAGGAGAGACACTAGATCTATTTTGACATTAATGCCATTGGCTTTCATTTCTATTGCAGGACATCCTTCTTGTTTGTTTACTTGTTTGTTTTGCCTACAACTGAAAGCCATATTTCCATGAAATTAGTGTCTACTATCAGTGGCAGTGAAATGAGAGGAATAAGCAGCCTTAAAAATGTAATGGGTTTTTATCTCTTCTGTACTATGAGCTAGGAGTAAGTCAGTTTGTCAGTTTTACAGCTAATCTTAACTGTGTGACAGTAGCGTGTTCTCTGTCATGAGTATTCTTTGTACCCTTAACCTGTTCAATATTCAAAAGCAGAGTGACAATCAATACTTCAAAATTCTTATCTGTTACAG
Seq C2 exon
AATTTCACAAACTTATTTGGACAACCATTGGTGTGCTTGCTTTCTCCAACAGCATATCCAAAAGCGTTACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001037:ENSGALT00000001535:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(5.7=100)
A:
NA
C2:
PF120703=DUF3550=FE(5.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]