GgaEX0001101 @ galGal3
Exon Skipping
Gene
ENSGALG00000001037 | SCAI
Description
NA
Coordinates
chr17:10271436-10276330:+
Coord C1 exon
chr17:10271436-10271541
Coord A exon
chr17:10272033-10272114
Coord C2 exon
chr17:10276258-10276330
Length
82 bp
Sequences
Splice sites
3' ss Seq
AAGCATCTTTCTCTTTTCAGTCT
3' ss Score
8.05
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CTGTAGGCCCATACGATTTTGGTGGTGTTCTGACAAATAGTAACCGGGACGTTATAAATGGAGATGCTATCCACAAGCGAAACCAATCTTACAAGGAGATGCATTG
Seq A exon
TCTTCATCCTGGGGATCTCTACCCTTTCACAAGAAAGCCACTTTTTATCATTGTGGATTCTTCGAACAGTGTGGCCTATAAG
Seq C2 exon
AATTTCACAAACTTATTTGGACAACCATTGGTGTGCTTGCTTTCTCCAACAGCATATCCAAAAGCGTTACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001037-'16-21,'16-17,18-21
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.111 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(7.4=100)
A:
PF120703=DUF3550=FE(5.7=100)
C2:
PF120703=DUF3550=FE(5.1=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCATACGATTTTGGTGGT
R:
ACGCTTTTGGATATGCTGTTGGA
Band lengths:
168-250
Functional annotations
There are 0 annotated functions for this event