BtaEX6046144 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015553 | SCAI
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:HGNC:26709]
Coordinates
chr11:95941530-95954429:-
Coord C1 exon
chr11:95954330-95954429
Coord A exon
chr11:95952230-95952311
Coord C2 exon
chr11:95941530-95941602
Length
82 bp
Sequences
Splice sites
3' ss Seq
CGTCGTTGTTGTTTCCCCAGCCT
3' ss Score
7
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTCCTTATGATTTTGGAGGGGTACTTACTAATAGTAACCGAGATATTATAAATGGAGATGCCATCCACAAACGAAATCAGTCCCACAAGGAAATGCATTG
Seq A exon
CCTCCATCCTGGAGACCTCTACCCCTTCACAAGGAAGCCGCTGTTCATCATTGTCGATTCATCCAACAGTGTTGCTTACAAG
Seq C2 exon
AATTTCACAAACTTATTTGGACAGCCACTAGTCTGCTTGCTTTCTCCTACAGCCTACCCAAAAGCTTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015553-'18-15,'18-13,20-15=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(6.7=100)
A:
PF120703=DUF3550=FE(5.4=100)
C2:
PF120703=DUF3550=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTTATGATTTTGGAGGGGT
R:
AAGCTTTTGGGTAGGCTGTAGG
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]