RnoEX0078276 @ rn6
Exon Skipping
Gene
ENSRNOG00000025278 | Scai
Description
suppressor of cancer cell invasion [Source:RGD Symbol;Acc:1594720]
Coordinates
chr3:23370610-23384484:-
Coord C1 exon
chr3:23384385-23384484
Coord A exon
chr3:23380358-23380439
Coord C2 exon
chr3:23370610-23370682
Length
82 bp
Sequences
Splice sites
3' ss Seq
CCTCACTGTTTTTTCTGCAGCCT
3' ss Score
9.5
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTCCTTATGACTTTGGAGGTGTACTTACTAATAGTAACCGGGACATTATCAATGGAGATGCAATCCACAAACGAAATCAGTCTCACAAAGAAATGCACTG
Seq A exon
CCTTCATCCTGGAGATCTGTATCCATTCACAAGGAAACCCCTGTTCATCATTGTGGACTCCTCCAATAGTGTTGCCTACAAG
Seq C2 exon
AATTTTACAAATTTGTTTGGACAGCCACTCGTCTGCCTTCTTTCTCCCACGGCATATCCAAAAGCTTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025278-'24-22,'24-19,25-22
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.294 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(6.7=100)
A:
PF120703=DUF3550=FE(5.4=100)
C2:
PF120703=DUF3550=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTTATGACTTTGGAGGTGT
R:
AAGCTTTTGGATATGCCGTGGG
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]