HsaEX0011610 @ hg38
Exon Skipping
Gene
ENSG00000173611 | SCAI
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:HGNC:26709]
Coordinates
chr9:124976114-124999990:-
Coord C1 exon
chr9:124999891-124999990
Coord A exon
chr9:124994934-124995015
Coord C2 exon
chr9:124976114-124976186
Length
82 bp
Sequences
Splice sites
3' ss Seq
CTTCGTTGTTGTTTTCCCAGCCT
3' ss Score
6.06
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTCCTTATGATTTTGGAGGTGTACTTACTAATAGTAACCGGGATATTATTAATGGAGATGCCATCCACAAACGAAATCAGTCCCACAAGGAAATGCACTG
Seq A exon
CCTTCATCCCGGGGATCTCTATCCTTTCACCAGGAAGCCACTGTTCATCATTGTGGATTCGTCTAATAGTGTTGCGTATAAG
Seq C2 exon
AATTTCACAAACTTGTTTGGACAGCCACTAGTCTGCTTGCTTTCTCCTACAGCATATCCAAAAGCTTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173611-'33-41,'33-38,34-41=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.287 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=PU(13.3=90.9)
A:
PF120703=DUF3550=FE(36.0=100)
C2:
PF120703=DUF3550=PU(77.4=96.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTTATGATTTTGGAGGTGTACT
R:
AAGCTTTTGGATATGCTGTAGGAGA
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development