MmuEX6101007 @ mm9
Exon Skipping
Gene
ENSMUSG00000035236 | Scai
Description
suppressor of cancer cell invasion [Source:MGI Symbol;Acc:MGI:2443716]
Coordinates
chr2:38939058-38954995:-
Coord C1 exon
chr2:38954896-38954995
Coord A exon
chr2:38950223-38950304
Coord C2 exon
chr2:38939058-38939130
Length
82 bp
Sequences
Splice sites
3' ss Seq
CCTCACTGTTTTTTCTGCAGCCT
3' ss Score
9.5
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTCCTTATGACTTTGGAGGTGTACTTACTAATAGTAACCGGGACATTATCAATGGAGATGCTATCCACAAGCGAAATCAGTCTCACAAGGAAATGCACTG
Seq A exon
CCTTCATCCTGGAGATCTCTATCCATTCACAAGGAAACCCCTGTTCATCGTTGTGGACTCCTCCAATAGTGTTGCCTACAAG
Seq C2 exon
AATTTTACAAATTTGTTTGGACAGCCACTCGTCTGCCTTCTTTCTCCCACGGCATATCCAAAAGCTTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035236-'21-18,'21-16,22-18=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(6.7=100)
A:
PF120703=DUF3550=FE(5.4=100)
C2:
PF120703=DUF3550=FE(4.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTTATGACTTTGGAGGTGT
R:
AAGCTTTTGGATATGCCGTGGG
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: