DreEX6011706 @ danRer10
Exon Skipping
Gene
ENSDARG00000060865 | scai
Description
suppressor of cancer cell invasion [Source:ZFIN;Acc:ZDB-GENE-060526-57]
Coordinates
chr5:31439088-31442332:+
Coord C1 exon
chr5:31439088-31439187
Coord A exon
chr5:31439321-31439402
Coord C2 exon
chr5:31442260-31442332
Length
82 bp
Sequences
Splice sites
3' ss Seq
CGCAAATGTGTGTTTTTCAGCCT
3' ss Score
6.91
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GACCTTATGACTTTGGAGGTGTCCTGACCAATACTAACCGAGATGTGGTGAATGGTGAGACGGTGCAGAAAAGAAACCAGGCACAAAAAGAGATGCACTG
Seq A exon
CCTCCACCCAGGAGACCTTTTCCCCTTCACTAGGAAACCTCTGTTTATCATTGTCGACTCCTCCAACAGCACAGCTTATAAG
Seq C2 exon
AATTTCTCCAATCTGTTCGGCCAGCCCCTTGTTTGCCTGCTTTCTCCAACAGTATATCCGAAGAGCATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060865-'14-18,'14-15,15-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.441 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(6.7=100)
A:
PF120703=DUF3550=FE(5.4=100)
C2:
PF120703=DUF3550=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACTTTGGAGGTGTCCTGAC
R:
CTTGCATGCTCTTCGGATATACTGT
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]