GgaEX0001101 @ galGal4
Exon Skipping
Gene
ENSGALG00000001037 | SCAI
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:HGNC:26709]
Coordinates
chr17:9550444-9555338:+
Coord C1 exon
chr17:9550444-9550549
Coord A exon
chr17:9551041-9551122
Coord C2 exon
chr17:9555266-9555338
Length
82 bp
Sequences
Splice sites
3' ss Seq
AAGCATCTTTCTCTTTTCAGTCT
3' ss Score
8.05
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CTGTAGGCCCATACGATTTTGGTGGTGTTCTGACAAATAGTAACCGGGACGTTATAAATGGAGATGCTATCCACAAGCGAAACCAATCTTACAAGGAGATGCATTG
Seq A exon
TCTTCATCCTGGGGATCTCTACCCTTTCACAAGAAAGCCACTTTTTATCATTGTGGATTCTTCGAACAGTGTGGCCTATAAG
Seq C2 exon
AATTTCACAAACTTATTTGGACAACCATTGGTGTGCTTGCTTTCTCCAACAGCATATCCAAAAGCGTTACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001037_MULTIEX2-2/4=C1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.111 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(7.0=100)
A:
PF120703=DUF3550=FE(5.4=100)
C2:
PF120703=DUF3550=FE(4.8=100)
Main Skipping Isoform:
ENSGALT00000001535fB112
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCATACGATTTTGGTGGT
R:
ACGCTTTTGGATATGCTGTTGGA
Band lengths:
168-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]