HsaEX0011610 @ hg19
Exon Skipping
Gene
ENSG00000173611 | C9orf126
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:26709]
Coordinates
chr9:127738393-127762269:-
Coord C1 exon
chr9:127762170-127762269
Coord A exon
chr9:127757213-127757294
Coord C2 exon
chr9:127738393-127738465
Length
82 bp
Sequences
Splice sites
3' ss Seq
CTTCGTTGTTGTTTTCCCAGCCT
3' ss Score
6.06
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTCCTTATGATTTTGGAGGTGTACTTACTAATAGTAACCGGGATATTATTAATGGAGATGCCATCCACAAACGAAATCAGTCCCACAAGGAAATGCACTG
Seq A exon
CCTTCATCCCGGGGATCTCTATCCTTTCACCAGGAAGCCACTGTTCATCATTGTGGATTCGTCTAATAGTGTTGCGTATAAG
Seq C2 exon
AATTTCACAAACTTGTTTGGACAGCCACTAGTCTGCTTGCTTTCTCCTACAGCATATCCAAAAGCTTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173611-'17-21,'17-18,18-21
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.284 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=PU(13.3=90.9)
A:
PF120703=DUF3550=FE(36.0=100)
C2:
PF120703=DUF3550=PU(75.0=96.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTTATGATTTTGGAGGTGTACT
R:
AAGCTTTTGGATATGCTGTAGGAGA
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)