GgaINT0125752 @ galGal3
Intron Retention
Gene
ENSGALG00000008984 | C9orf86
Description
NA
Coordinates
chr17:995714-1000559:-
Coord C1 exon
chr17:1000527-1000559
Coord A exon
chr17:995806-1000526
Coord C2 exon
chr17:995714-995805
Length
4721 bp
Sequences
Splice sites
5' ss Seq
GAATGAGGA
5' ss Score
-13.72
3' ss Seq
GTTTCTTTCTTTTTCCTCAGGCA
3' ss Score
11.09
Exon sequences
Seq C1 exon
GTGCTGCTAAGTGACAAGGAATGCAGTCAGGAA
Seq A exon
TGAGGAGGATGCACAGAAAGCTCGGTACCCTGGACTTCAGGAGAGCAGCCTTTGGTCTCTTAAGGGATCTGCTTGGTAGAGTACCATGGGATAAAGTCCTGGAGGGAACGGGGCCCCAAGGAATTTGATTAGCATTCAAGGATAACCTCCCTTATGCTCATGGTGATGCATCTCATCAAAGAGGAAGTTGGGCAAAAAGCATCAGGTCTGCATGGATGAACGTGGAGCTCCTGGCCATACTCCAGCACAGAAGGAAACCTCCAGAGAGAGAAAGCAAGGACAGGTAGCCTGTGAGGAGTATGGAAAGATTGTCCAAGCAGACAGGGATCAGATTTGGGAAGCTAAAAGCTTCTATAGATGTGTTAGTGATAAAGGAGGACTAGGGAAAATGTGGACCCTCTCTGGAAGGAAATGGAAAATTTCTTTACCCAGGGGTGAAGAAGACTGAGGTACTCAACAACTTTTTTTGTCTCAGTCTTCACCAGAAGTGCTGTAGTCATGCTGCCCTAGTCACAGAAGGCAGAGACAGGGGCTAGGAGAACAAAGAACTGCATGCTGTAGGAAAAGATAAGGTTCAAGACCAGCTAAGGGATCTGAAGGTGCACAAGTCAATGGGACCTACCAAGATGCATGCAGAGTTCCAAGGAAACTGGTAGATGAAATGGCAAAGGCATTGTCTGTCATATTTGAGAAGGGTCATATTTGTGGCAGTCAGATGAAGTTCCCAGAGACCATAAAATGGGAAACGCAACCTCCATATTAAAAAAGGTAAAAAAAAAAAAAAAAAAAAAAGGAAGATCTGGGGAAGTACAGGCTAGTCTGTCTTACCTCTGTACTGGGTAAGATCATGGGGCAGATCCTCCTGGAAACTATGTTAAGACACATGGAAAAGAGAAATGGTTGATGATATCAAGCGTGGCTTCAATAGGGGCAGATCCACCCTGACAAATTTGGTGGCCCTACAGAATGGGATTACAGCATTGGTGGATAAGGGGAGACCAACTGATGTCATCTACCTTGACATGAGTAGAGCATTTGGCACTGCCTTGGACAGCATCCTCATCTCTAAAGAGACAGGCATATAGAGGATGGACTGACTGTTCAGTGGGTAAGGGATTGGCTGGATGCTTGTGCTTAAAGAGATGTGGCCAACAGCTTGATGTCCAGGTAGGGACCAAGAATGAGTGGTGGTCCTCAGGGGTCTGTATTGGTACTGTATCGGCAGCGCAGCCAGCAGGGTAAGGGAAGTGATTGTCCCCCTCTGCTCTGCTGTTGTGAGACTCAACCTGCAGTGCTGCTTCAGCTCTGGGCACCCAGCCCAGGAAAGATGTGGAGCTGTTGGAGTGAGTCCAGAGGATGCTGTGAGGATACTCAGAGGACTGGAGCATCTTTGCTATGGAGACAAGGCTGGGATAGCTGGAGTTGTTCAGCCTCAGGCAGCAGAGGTCCTGGGAAGACCTTAAACATCCATCCAGTTCCTAAAAGGATCCTAGAGGAAAGCTGCAGAGGAACTTCTTACAGGGACAAGTAGTGATAAGACAAGGAGTGATGGCTTTAAACTAAGGGTAGATTTAGAGTAGGTATAAGGAAGAAATTGTTCACAGTGATGGTGGTGAAGCACGGGACAGATTGCCCAGAGAAACTATGCATCTTCTCTCCATCCCTGGAGCTGTTCAAGGCCAAACTGGGTGTGGCTTTTGGCAACCTATCTGGTGGTTGGTATCTCTGCCCGTGGTAGGTAGTAGGAGCTGGGTCGTTTTTAAGGTCCCTTCCAACTCTATGATGCTATGAAATGCCAGTGGTACTTCAAAATGTCAATCTGTGAGCTTAATCAGAGCTTACTGAGGCTGTAAGAAAAGGGACACGTCATAGAGGATCTCACCTTTAAGTATAATGGCTGCATTTTAGCATGTACCTTAGCAGAAGCAGGTGAGCTGGAGAGAAACGTGAAGATTTATCTAGATGGAATTACGGCCATGAGGTGGCAGAAGTCTTTATTACCAATTGTCTATGTCTTCTCCAGTTATGTAGTCTGTTGCCTTTTGCACTTTCCTATGAGGTTGATGGGAACTTTATCTATCCCTATATCTGTCCCCCCGCCCCCAATACAAGAAACATGTAGAGCTGTTGGAGTGGGTCTAGAGGGCCATATGAATGATCAGAGGGCTGGAGCACCTCCCTTATGAAGACAGGCTGAGGGAGCTGGGCTTTTTTAGCCTTGGAGAAGAGAAGACTGCAAGGAGACCTCATTGCAGCTTTCCAGTATTTAAAAGGGGATTATAAACAGGAGGGGAATCAACTCTATACAAGGATAGATAGTGACAGGACAAGTGGCAATGGTTTTAAGCTCAAGGAGGGAAGGTTTAGATTAGATGTTAAGAGGGAGTTCTTTGCAGATAGGGTGGTGATGTGCTGGAACAGTCTGCCCTGAGAGGCTGTGGGTGCTCCATCCCTGGAGGTGTTCAAGACCCAGGTTGGATGGGGTCCTGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAAAAGCTGCAAAATAATATCCTCAGGAAAGGTCAGTTTAAAGGCGCTTGATTGCGTGATCTCTACTGCAGATCTTAAAGAGCTTTATCCCTCCTGTTCATATGTTGTTGCATTTTAGGGTGCAGTGCATGGGCAGAGTTCTGGTACTTGTTCAGTAACCTCTTGAAAACCACTAGAAATTGATGCAAAATCTGGTGTTACTGATACACAGATTGCTGAGCACTCAGTTATGGGGATGAGTCACAGCAGCGAAGAGTTTTCTGGCACTGAGGATGGCAGTCGTCCACAATCCATGTGATCAAATCTGACGGATTTTCTCCAAAAATGTTGTTCTCTTATGGGAAAAGGCCTCTATGAGAAAAGTTGTGGCAGCTGCTTCTTCCTTCACAGTTGTGTATATTTTTCACTCTTGGCAGATGAGTCAGAGTTGTTCTGTTGGTACCAAATTGCAGCAGGAGCCTTGCAGGTTCAATTGTGACCACCACTGTATTTTATGCAGAGTCCAAATAGTGAAAACCAAACTGACTGCTAATGCATACTTTGAACTCTGCGTGGAAGAAAATCAGTAGAAACTACATCCTAGCTGTACACATCAGAAACATTAGAAATACAGACAATATTTGGGTTGGCAAAGAAATGGAATGTGGGAGGCAAGTTCTCTGCACTCTGTTTTGTAGATTATACAGACTTATCTTGCTAATGCAGGATTTCGGGGCACAGGGAGAGAGGAAGAAGTGCATTTTAGGACTTCCTGCCAGTCATGGTTTCTTTTCAAAGGCTGCCAGGTGATACACGTCCTGATACACGTCCTGGTCCTGTGGGCACTGCAAGCTGTGACCCATCAAGGCACCTTTTCTAAATGATGATAATGTGAACTCCATAGGTACTTTTTACAGTGGCTGTCACTTTTGGCAGTTTGCCTATTTAGCACTGTATCAGTTGTATTCTGTATGAGCCTGAAGTTGAATTATTTACTGCTCTTTTTGCGTTTCTTTCTTTTTCCTCAG
Seq C2 exon
GCAGAGTCAGAAATGGCCCTGGATGCAGAGTTTCTGGATGTGTATAAAAATTGCAATGGTGTAGTGATGATGTTTGACATCACCAAACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008984:ENSGALT00000014614:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084778=Miro=FE(7.4=100)
A:
NA
C2:
PF084778=Miro=FE(22.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]