DreINT0123781 @ danRer10
Intron Retention
Gene
ENSDARG00000079046 | rabl6a
Description
RAB, member RAS oncogene family-like 6a [Source:ZFIN;Acc:ZDB-GENE-030131-6174]
Coordinates
chr5:5162469-5162967:-
Coord C1 exon
chr5:5162912-5162967
Coord A exon
chr5:5162561-5162911
Coord C2 exon
chr5:5162469-5162560
Length
351 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTT
5' ss Score
7.63
3' ss Seq
AATTTTTGCGTTCTGTGCAGTCT
3' ss Score
7.04
Exon sequences
Seq C1 exon
CAGGGAAAGGCAAAAGACGCGGGGAAAATCTGAAACTGGAAAACGAACCGCAGGAG
Seq A exon
GTATTTACTGCTGTTTGTATGTAGTTATTACTACTAGTCAAACGTCTTGAGATTTCTACAATTATTTTATTGCCACAAGATGAAAACTGCAGTGTGAATTACAAACTGTGTGAAATATTATTACAATTTAATATAACCGTTTTTTATTAAAATATTTGAATATTAAATTTCTCTTTGTCTTTAGTGCCAATATGTATATTATAATTATTTTTTTTGAATGAATGATTGAAAAATATTAGATAGTGATACCTTAGATTTGCATCTAATAACAATTTGACATCCTCAAATATTAAAGCTACACGTGAGTTGACATTAATGTTCATTCAGCTGGAATTTTTGCGTTCTGTGCAG
Seq C2 exon
TCTGAAACAGAGATGGCTCTTGACGCAGAGTTTCTGGATGTCTATAAGAACTGTAATGGCGTGATTATGATGTTCGACATCACCAAACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079046:ENSDART00000113716:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.737 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084778=Miro=FE(13.2=100)
A:
NA
C2:
PF084778=Miro=FE(22.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]